DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and Shoc2

DIOPT Version :9

Sequence 1:NP_001188938.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_001161977.1 Gene:Shoc2 / 56392 MGIID:1927197 Length:582 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_001188938.1 LRR_RI <21..200 CDD:238064
leucine-rich repeat 21..41 CDD:275380
LRR_8 40..98 CDD:290566
leucine-rich repeat 42..64 CDD:275380
leucine-rich repeat 65..87 CDD:275380
LRR_8 86..140 CDD:290566
leucine-rich repeat 88..110 CDD:275380
leucine-rich repeat 111..133 CDD:275380
leucine-rich repeat 134..156 CDD:275380
LRR_8 156..213 CDD:290566
leucine-rich repeat 157..179 CDD:275380
leucine-rich repeat 180..202 CDD:275380
leucine-rich repeat 203..225 CDD:275380
leucine-rich repeat 226..248 CDD:275380
leucine-rich repeat 272..294 CDD:275380
LRR_8 279..328 CDD:290566
leucine-rich repeat 295..317 CDD:275380
leucine-rich repeat 318..340 CDD:275380
LRR_8 340..396 CDD:290566
leucine-rich repeat 364..386 CDD:275380
PDZ_signaling 770..846 CDD:238492
Shoc2NP_001161977.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..88
LRR 1 101..122
leucine-rich repeat 104..124 CDD:275380
PLN00113 <115..>483 CDD:215061
LRR 2 124..145
leucine-rich repeat 125..147 CDD:275380
LRR 3 147..169
leucine-rich repeat 148..170 CDD:275380
LRR 4 170..191
leucine-rich repeat 171..193 CDD:275380
LRR 5 193..215
leucine-rich repeat 194..216 CDD:275380
LRR 6 216..237
leucine-rich repeat 217..239 CDD:275380
LRR 7 239..260
leucine-rich repeat 240..262 CDD:275380
LRR 8 262..283
leucine-rich repeat 263..285 CDD:275380
LRR 9 285..307
leucine-rich repeat 286..332 CDD:275380
LRR 10 308..329
LRR 11 332..353
leucine-rich repeat 333..380 CDD:275380
LRR 12 356..377
LRR 13 380..400
leucine-rich repeat 381..403 CDD:275380
LRR 14 403..424
leucine-rich repeat 404..426 CDD:275380
LRR 15 426..448
leucine-rich repeat 427..449 CDD:275380
LRR 16 449..470
leucine-rich repeat 450..472 CDD:275380
PLN03150 <453..527 CDD:178695
LRR 17 472..494
leucine-rich repeat 473..495 CDD:275380
LRR 18 495..516
leucine-rich repeat 496..519 CDD:275380
LRR 19 518..540
LRR 20 542..563
leucine-rich repeat 543..563 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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