DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and lrrc1

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_001013463.2 Gene:lrrc1 / 541316 ZFINID:ZDB-GENE-050320-1 Length:526 Species:Danio rerio


Alignment Length:562 Identity:194/562 - (34%)
Similarity:292/562 - (51%) Gaps:48/562 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CFPCFKFKRE-EVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQLFYCQGLRVLHV 70
            |.|.::..|. |.|||...|...:.|  |::::..:||||.|...:|:.||...|....||.|.:
Zfish     4 CIPLWRCNRHIEAIDKRHCSLLFVPD--EIYRYRGSLEELLLDANQLRDLPKPFFNLTKLRKLGL 66

  Fly    71 NSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISLQ 135
            :.|.::.:|..|.:..||..||::||.|:.:||.|..||.|...|.|.|.|.|||::...|.:|.
Zfish    67 SDNEIQRLPGDIANFNQLVELDISRNDIMELPESISYCKTLQVADFSGNPLTRLPESFPELRNLA 131

  Fly   136 ELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGEL 200
            .|.:|:..|:.||.|.|.|.||..||||.|.|..||:|:.:|..|:.||:|.||...|||.:|.|
Zfish   132 CLSINDISLQALPDNIGNLCNLVSLELRENLLTYLPESLSQLQKLEELDVGSNELYNLPETIGCL 196

  Fly   201 KSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPFS 265
            .||::||:|.||:..:.|.:|.:|.|...:.:.|.|:.||.|:.|..::..|.:..|.::..|..
Zfish   197 VSLKDLWLDGNQLSDIPAEVGSMRSLTCLDVSENKLERLPEEMGNLLSLTDLLVSQNLIDLLPEG 261

  Fly   266 VGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQLRQ 330
            :|.||.|...|.:.|.|.:||:||.:.|.|.||||:.|:|:.||.:||.|:.|.....|.|:|..
Zfish   262 IGKLKRLSILKADQNRLVQLPESIGHCESLTELVLTENQLVNLPRSIGKLKKLSNFNCDRNRLAS 326

  Fly   331 LPDELCSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDN 395
            ||.|:..|..|:||.|..|:|..:|..:...|::.||::..|.:..||:::.:| .|.::|||:|
Zfish   327 LPKEIGGCCSLNVLCVRENRLMRIPPELSQASELHVLDLSGNRLLYLPLTLTSL-RLKALWLSEN 390

  Fly   396 QSQPLVPLQY-LD-ASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPHASPSRRIC 458
            |||||:..|. :| .|.:..|||.:|||...:..:..:...|:                     |
Zfish   391 QSQPLLTFQTDVDPESGEKVLTCVLLPQQPCESENTGSDNLAR---------------------C 434

  Fly   459 FA----EEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLMRSPTPYPKELRQMSKYVRQA 519
            .|    .|::||.:.....|.|..|.:.. .....|:......|:|..||:|.||:.|.|.   |
Zfish   435 GALESLVESSILDDTWDDKAANRMSTIRF-MEDDDDEDDEERTLLRRATPHPGELKNMKKV---A 495

  Fly   520 QAATSSANASEVREARVVTNGQIHCDSN-NANQDVVDQATTS 560
            ::.....||::            ..||| |...:.||:.|||
Zfish   496 ESIRKDMNAAK------------GLDSNKNEVNNAVDRVTTS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 153/396 (39%)
leucine-rich repeat 21..41 CDD:275380 4/19 (21%)
leucine-rich repeat 42..64 CDD:275380 9/21 (43%)
leucine-rich repeat 65..87 CDD:275380 6/21 (29%)
leucine-rich repeat 88..110 CDD:275380 10/21 (48%)
leucine-rich repeat 111..133 CDD:275380 9/21 (43%)
leucine-rich repeat 134..156 CDD:275380 9/21 (43%)
leucine-rich repeat 157..179 CDD:275380 11/21 (52%)
leucine-rich repeat 180..202 CDD:275380 11/21 (52%)
leucine-rich repeat 203..225 CDD:275380 8/21 (38%)
leucine-rich repeat 226..248 CDD:275380 7/21 (33%)
leucine-rich repeat 272..294 CDD:275380 8/21 (38%)
leucine-rich repeat 295..317 CDD:275380 12/21 (57%)
leucine-rich repeat 318..340 CDD:275380 8/21 (38%)
leucine-rich repeat 364..386 CDD:275380 6/21 (29%)
PDZ_canonical 778..846 CDD:467153
lrrc1NP_001013463.2 None
Blue background indicates that the domain is not in the aligned region.

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