DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and lrrc8da

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:XP_002660860.1 Gene:lrrc8da / 497399 ZFINID:ZDB-GENE-061009-26 Length:825 Species:Danio rerio


Alignment Length:407 Identity:103/407 - (25%)
Similarity:178/407 - (43%) Gaps:63/407 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VIDKLDYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQL------FYCQGLRVLHVNSNNLE 76
            |.|..|.....|...|||....:..:...|....|...|.::      |....||.||:...::.
Zfish   462 VFDLTDLEILKLELIPEVRISAKVSQMTNLRELHLYHCPAKVEQTAFTFLRDHLRCLHIKFTDVA 526

  Fly    77 SIPQAIGSLRQLQHLDLNRNL------IVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLI-SL 134
            .||..|..||.|:.|:|..||      ::.: |.::..:||..|.|..| |.::|..:|.|. .|
Zfish   527 EIPPWIYLLRSLKELNLFGNLNSEHNKMIGL-ESLRDLRHLRTLYLKSN-LNKIPSNLTDLSPHL 589

  Fly   135 QELLLNETYLEFLPAN-FGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVG 198
            .:|:::....:.|..| ..::.:|..|||...:|..:|.|:..|.|||.||:..|....:.|:  
Zfish   590 VKLVIHNDGTKLLVMNSLKKMTSLVDLELHNCDLERIPHSIFSLANLQELDLKNNNIRTIEEI-- 652

  Fly   199 ELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFP 263
                     |.|..:||:..                                 |.:..|.:...|
Zfish   653 ---------ISFQHLRRLVC---------------------------------LKLWYNKISIIP 675

  Fly   264 FSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQL 328
            .|:|::|||.:.....|.:..||.|:.:|.:|..:.||:|.:..:|..||:|.:|:......|::
Zfish   676 PSIGLVKSLESLIICHNKVENLPPSLFHLPKLRHIDLSNNSISNIPVEIGLLHNLQHFAITGNKV 740

  Fly   329 RQLPDELCSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALP--VSMLNLVNLTSMW 391
            ..||.:|..|.:|.||.|.:|.::::|.:||.|.::..|.:..|.::.||  :....|:....::
Zfish   741 EVLPSQLFKCSKLKVLCVGHNNITSIPDSIGQLVQLSHLELKGNCLDCLPFQLGQCQLLRKNLLF 805

  Fly   392 LSDNQSQPLVPLQYLDA 408
            :.|:....| |::..|:
Zfish   806 VEDHLFDTL-PIEVKDS 821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 102/404 (25%)
leucine-rich repeat 21..41 CDD:275380 5/19 (26%)
leucine-rich repeat 42..64 CDD:275380 4/27 (15%)
leucine-rich repeat 65..87 CDD:275380 8/21 (38%)
leucine-rich repeat 88..110 CDD:275380 6/27 (22%)
leucine-rich repeat 111..133 CDD:275380 8/22 (36%)
leucine-rich repeat 134..156 CDD:275380 4/22 (18%)
leucine-rich repeat 157..179 CDD:275380 8/21 (38%)
leucine-rich repeat 180..202 CDD:275380 6/21 (29%)
leucine-rich repeat 203..225 CDD:275380 4/21 (19%)
leucine-rich repeat 226..248 CDD:275380 0/21 (0%)
leucine-rich repeat 272..294 CDD:275380 6/21 (29%)
leucine-rich repeat 295..317 CDD:275380 8/21 (38%)
leucine-rich repeat 318..340 CDD:275380 6/21 (29%)
leucine-rich repeat 364..386 CDD:275380 5/23 (22%)
PDZ_canonical 778..846 CDD:467153
lrrc8daXP_002660860.1 Pannexin_like 1..360 CDD:463622
leucine-rich repeat 491..533 CDD:275380 10/41 (24%)
LRR 538..>801 CDD:443914 79/308 (26%)
leucine-rich repeat 538..565 CDD:275380 6/27 (22%)
leucine-rich repeat 566..612 CDD:275380 12/46 (26%)
leucine-rich repeat 613..635 CDD:275380 8/21 (38%)
leucine-rich repeat 636..660 CDD:275380 8/34 (24%)
leucine-rich repeat 661..683 CDD:275380 5/54 (9%)
leucine-rich repeat 684..706 CDD:275380 6/21 (29%)
leucine-rich repeat 707..729 CDD:275380 8/21 (38%)
leucine-rich repeat 730..752 CDD:275380 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.

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