DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and LRCH4

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:XP_047276334.1 Gene:LRCH4 / 4034 HGNCID:6691 Length:727 Species:Homo sapiens


Alignment Length:262 Identity:79/262 - (30%)
Similarity:114/262 - (43%) Gaps:62/262 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 GRLVNLRILE-------LRLNN--LMTLPKSMVR---LINLQRLDIGGNEFTELPEVVGELKSLR 204
            ||....|.||       |.|:|  |...|:...|   |.::.:.|:..|.|.|:||...:|.||.
Human    30 GRRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLE 94

  Fly   205 ELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPFSVGML 269
            .|.:..|.:|.::..:|.|..|.:...:.|.|..||                      |:     
Human    95 GLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSLLP----------------------PY----- 132

  Fly   270 KSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQLRQLPDE 334
                        :.:||        |..|::|:|||..||..||.|.|||.|....|:|:.||.|
Human   133 ------------ICQLP--------LRVLIVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSE 177

  Fly   335 LCSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDN--QS 397
            ||....|..|:|..||||.||:.:|:|..:: |:...|.::.:|||...|.:|..:.|..|  ||
Human   178 LCGLSSLRDLNVRRNQLSTLPEELGDLPLVR-LDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQS 241

  Fly   398 QP 399
            .|
Human   242 PP 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 79/262 (30%)
leucine-rich repeat 21..41 CDD:275380
leucine-rich repeat 42..64 CDD:275380
leucine-rich repeat 65..87 CDD:275380
leucine-rich repeat 88..110 CDD:275380
leucine-rich repeat 111..133 CDD:275380
leucine-rich repeat 134..156 CDD:275380 2/3 (67%)
leucine-rich repeat 157..179 CDD:275380 10/33 (30%)
leucine-rich repeat 180..202 CDD:275380 7/21 (33%)
leucine-rich repeat 203..225 CDD:275380 6/21 (29%)
leucine-rich repeat 226..248 CDD:275380 5/21 (24%)
leucine-rich repeat 272..294 CDD:275380 2/21 (10%)
leucine-rich repeat 295..317 CDD:275380 11/21 (52%)
leucine-rich repeat 318..340 CDD:275380 10/21 (48%)
leucine-rich repeat 364..386 CDD:275380 6/21 (29%)
PDZ_canonical 778..846 CDD:467153
LRCH4XP_047276334.1 leucine-rich repeat 46..69 CDD:275380 7/22 (32%)
LRR <65..>241 CDD:443914 65/223 (29%)
leucine-rich repeat 70..92 CDD:275380 7/21 (33%)
leucine-rich repeat 93..115 CDD:275380 6/21 (29%)
leucine-rich repeat 116..131 CDD:275380 5/36 (14%)
leucine-rich repeat 138..160 CDD:275380 11/21 (52%)
leucine-rich repeat 161..183 CDD:275380 10/21 (48%)
leucine-rich repeat 184..204 CDD:275380 10/19 (53%)
leucine-rich repeat 206..228 CDD:275380 6/22 (27%)
CH_SF 540..>623 CDD:469584
Blue background indicates that the domain is not in the aligned region.

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