DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lap1 and LRRC8B

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_056165.1 Gene:LRRC8B / 23507 HGNCID:30692 Length:803 Species:Homo sapiens


Alignment Length:360 Identity:107/360 - (29%)
Similarity:169/360 - (46%) Gaps:22/360 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FKFKREEVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQL-FYCQGLRVLHVNSNN 74
            |:....||   |.....|....|........|:||.:..:.|....|.| |..:.|::|.:....
Human   437 FELTEMEV---LSLELIPEVKLPSAVSQLVNLKELRVYHSSLVVDHPALAFLEENLKILRLKFTE 498

  Fly    75 LESIPQAIGSLRQLQHLDLNRNLIVNVPEEI--------KSCKHLTHLDLSCNSLQRLPDAITSL 131
            :..||:.:..|:.|:.|.|:..::   ||::        :..|:|..|.|. :||.|:|..:|.|
Human   499 MGKIPRWVFHLKNLKELYLSGCVL---PEQLSTMQLEGFQDLKNLRTLYLK-SSLSRIPQVVTDL 559

  Fly   132 I-SLQELLL-NETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELP 194
            : |||:|.| ||.....:..|..::|||:.|||...:|..:|.|:..|.||..||:..|....:.
Human   560 LPSLQKLSLDNEGSKLVVLNNLKKMVNLKSLELISCDLERIPHSIFSLNNLHELDLRENNLKTVE 624

  Fly   195 EVVG--ELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSN 257
            |::.  .|::|..|.:..|.|..:.|.||.|.:|:....:.|.::.||.:|.....:..|.:..|
Human   625 EIISFQHLQNLSCLKLWHNNIAYIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLHYLDLSYN 689

  Fly   258 SLEAFPFSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLF 322
            .|...|..:..|.:|..|...:|.:..|||.:...::|:.|:|..|.|:.|...:|.|.:|..|.
Human   690 HLTFIPEEIQYLSNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGKNSLMNLSPHVGELSNLTHLE 754

  Fly   323 ADDNQLRQLPDELCSCQQL--SVLSVANNQLSALP 355
            ...|.|..||.||..||.|  :.|.|..|.|:.||
Human   755 LIGNYLETLPPELEGCQSLKRNCLIVEENLLNTLP 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 106/359 (30%)
leucine-rich repeat 21..41 CDD:275380 3/19 (16%)
leucine-rich repeat 42..64 CDD:275380 7/22 (32%)
leucine-rich repeat 65..87 CDD:275380 5/21 (24%)
leucine-rich repeat 88..110 CDD:275380 5/29 (17%)
leucine-rich repeat 111..133 CDD:275380 9/22 (41%)
leucine-rich repeat 134..156 CDD:275380 7/22 (32%)
leucine-rich repeat 157..179 CDD:275380 8/21 (38%)
leucine-rich repeat 180..202 CDD:275380 6/23 (26%)
leucine-rich repeat 203..225 CDD:275380 8/21 (38%)
leucine-rich repeat 226..248 CDD:275380 5/21 (24%)
leucine-rich repeat 272..294 CDD:275380 6/21 (29%)
leucine-rich repeat 295..317 CDD:275380 8/21 (38%)
leucine-rich repeat 318..340 CDD:275380 9/21 (43%)
leucine-rich repeat 364..386 CDD:275380
PDZ_canonical 778..846 CDD:467153
LRRC8BNP_056165.1 Pannexin_like 1..334 CDD:463622
LRR 1 464..486 7/21 (33%)
leucine-rich repeat 465..488 CDD:275380 7/22 (32%)
LRR 2 488..509 4/20 (20%)
leucine-rich repeat 489..511 CDD:275380 5/21 (24%)
LRR 511..>789 CDD:443914 87/281 (31%)
LRR 3 511..532 5/23 (22%)
leucine-rich repeat 512..539 CDD:275380 5/29 (17%)
LRR 4 539..559 8/20 (40%)
leucine-rich repeat 540..562 CDD:275380 9/22 (41%)
LRR 5 562..582 8/19 (42%)
leucine-rich repeat 563..609 CDD:275380 17/45 (38%)
LRR 6 586..607 8/20 (40%)
LRR 7 609..630 6/20 (30%)
leucine-rich repeat 610..634 CDD:275380 6/23 (26%)
LRR 8 634..655 7/20 (35%)
leucine-rich repeat 635..657 CDD:275380 8/21 (38%)
LRR 9 657..678 5/20 (25%)
leucine-rich repeat 658..680 CDD:275380 5/21 (24%)
LRR 10 680..701 4/20 (20%)
leucine-rich repeat 681..703 CDD:275380 5/21 (24%)
LRR 11 703..724 6/20 (30%)
leucine-rich repeat 704..726 CDD:275380 6/21 (29%)
LRR 12 726..747 7/20 (35%)
leucine-rich repeat 727..749 CDD:275380 8/21 (38%)
LRR 13 749..771 8/21 (38%)
leucine-rich repeat 750..772 CDD:275380 9/21 (43%)
leucine-rich repeat 773..796 CDD:275380 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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