DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lap1 and lron-15

DIOPT Version :9

Sequence 1:NP_001188938.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:NP_495322.3 Gene:lron-15 / 174079 WormBaseID:WBGene00016974 Length:1275 Species:Caenorhabditis elegans


Alignment Length:955 Identity:199/955 - (20%)
Similarity:344/955 - (36%) Gaps:244/955 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FKREEVIDKLDYSNTPL-----TDFPEVWQHERTLEELYLSTTRLQALPPQLF--YCQGLRVLHV 70
            |:....|.:||.|...:     :.|..|..    ::.|.||..|:..||..:.  :.:.|:.|.:
 Worm   306 FRSFRKIRELDISYNQIQTVEDSSFETVGH----MQSLDLSYNRIAYLPRGMLKNFAKTLKTLKL 366

  Fly    71 NSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEEI-KSC-------------------------K 109
            ..|.:.:.|:|:..||.|.||:||.|.:..:..:: |.|                         |
 Worm   367 AENMIHATPEALRDLRNLTHLNLNGNKLNRIDGDVLKGCTDTLVELFIANNYLEHIPHGVLSGMK 431

  Fly   110 HLTHLDLSCNSLQRLPDAITSLISLQELLLNET------------------YL--EFLPANFGRL 154
            .|.|||:|.|.:..|... |||:|:.:   .||                  ||  |.:|.     
 Worm   432 QLEHLDISKNKIMSLKKP-TSLLSITK---EETSTVRRLNLAGNRINNMSDYLIFEHMPL----- 487

  Fly   155 VNLRILELRLNNLMTL-PKSMVRLINLQRLDIGGNEFTELPEVVGELKSLRELWIDFNQIRRV-S 217
              |..:::..|.:..: |:...:|.||:.|.:..|:....|.:. .|..||.|.:|.|||::: :
 Worm   488 --LTYVDVSFNRIRFISPRVFEKLKNLESLFLQNNQLAHFPSLF-RLDKLRHLMLDNNQIQKIDN 549

  Fly   218 ANIGKLRDLQHFEANGNLLDTLPSEL---SNWRNVEVLSICSNSLEAFPF-SVGMLKSLVTFKCE 278
            .::..|..|||....||.||.:...:   |:...::.|::..|.:.:... |...|.:|...:..
 Worm   550 FSLADLPKLQHLSLAGNQLDIITENMFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLS 614

  Fly   279 SNGLTELPD-SISYLEQLEELVLSHNKLIR-LPSTIGMLRSLRFLFADDNQLRQLP-DELCSCQQ 340
            .|.:..:.. :.|.|..|..|.||||::|: |||.:..|.:|..|..|.|.|.::. |...|...
 Worm   615 HNNIRTITSMTFSNLRNLRYLDLSHNRIIKILPSALYQLPALDVLHLDHNNLNEIDRDAFRSFSD 679

  Fly   341 LSVLSVANNQLSALP-QNIGNLSKMKVLNVVNNYINALPVSML---------------------- 382
            |..|.:::|...... :.:|::|::..|::.:|.||.:.:..:                      
 Worm   680 LQSLKLSHNAFRRFSCEFLGSISQVHQLDLSSNQINEIDIFCIARGIRKLSLASNSVEKINRKLL 744

  Fly   383 -NLVNLTSMWLSDNQSQPLVPLQYLDASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQ 446
             :...|||:.:|.|        ..:|..:.....|..|..:....|.|:...:...||      |
 Worm   745 QDATELTSIDISHN--------GIIDVDSDAFCECRKLSHIKLSHNYIRNLWKGTFQY------Q 795

  Fly   447 QQPHA--SPSRRICFAEEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLMRSPTPYPKEL 509
            :..|.  .....|.|..:.|...|...|...|.......|.......|| |:.|:        :|
 Worm   796 ESLHTLDISFNDILFLHQGTFGKNNILQLHVNNNKLSRIPLEALSSTMA-SLHLL--------DL 851

  Fly   510 RQMSKYVRQAQAATSSANASEVREARVVTNGQIHCDSNNA-------------NQDVVDQATTS- 560
            ...:..:..:...||..|.|.:..|    |.::....:.|             |..|...:.|: 
 Worm   852 AHNNIKIVDSSQLTSFGNLSILSFA----NNKVDSIEDGAFENLLSLKILDLSNNPVTSWSPTAF 912

  Fly   561 -----AIYGIAPETTHIYGVYQQPQQMAH------PVPTQEYYGL------PLVNYEA------- 601
                 :|..|....|   |::..| :.:|      .:...:.|.|      ||....|       
 Worm   913 RDLSHSISSINMANT---GLFSMP-KFSHRSIQSLNISCNKIYELSEKDLAPLTKVVALDISHNN 973

  Fly   602 -------------HYQQLYVEANTPLPTTHLNGD---QDYELQPLQQQPM-------------QQ 637
                         |.:||.|.||   |.|||..:   |.|:|:.|....|             |.
 Worm   974 LKQISSMAFEPLIHLKQLNVSAN---PITHLTNEHIQQLYKLETLHVSDMPFLLRLPDSHAFGQM 1035

  Fly   638 QALP------TPRLEPPPYHIARVYTKKTPEDLNLYESMRQRKQQQQL--QEQTIYQDALNSNSN 694
            ..|.      .|.: ..||.|:.:.:...|.. .:|..:::....:|.  .:..:.:..:.:..|
 Worm  1036 NNLKHFFLYNIPDM-ARPYQISSILSNLPPLH-TIYVDIKESALDRQFYTADTRLLRHLVVAGRN 1098

  Fly   695 FKTTAIGAQDVEESVDQLDYQNNISNNLEPNPEEEDQELDDTMSQHSLNSTATNNTSKASHKKST 759
            .....:||   ..::.....:..|.|:   :.||....:.||::..|:.|     .|...:|.:|
 Worm  1099 LTKIEVGA---FATIRGFRVRIEIHNS---SIEEFPSRIFDTLTGISILS-----LSLTDNKLTT 1152

  Fly   760 WIFGVHKNPTVKQVTLKWENSIGFDIAELLNQVGIFVSSITPNTN 804
            :                  |.....:|..:||.|..:.|:....|
 Worm  1153 F------------------NPFQSTVAPAVNQHGTILHSLELKNN 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_001188938.1 LRR_RI <21..200 CDD:238064 53/232 (23%)
leucine-rich repeat 21..41 CDD:275380 5/24 (21%)
LRR_8 40..98 CDD:290566 19/59 (32%)
leucine-rich repeat 42..64 CDD:275380 6/23 (26%)
leucine-rich repeat 65..87 CDD:275380 6/21 (29%)
LRR_8 86..140 CDD:290566 21/79 (27%)
leucine-rich repeat 88..110 CDD:275380 8/47 (17%)
leucine-rich repeat 111..133 CDD:275380 10/21 (48%)
leucine-rich repeat 134..156 CDD:275380 6/41 (15%)
LRR_8 156..213 CDD:290566 15/57 (26%)
leucine-rich repeat 157..179 CDD:275380 4/22 (18%)
leucine-rich repeat 180..202 CDD:275380 5/21 (24%)
leucine-rich repeat 203..225 CDD:275380 8/22 (36%)
leucine-rich repeat 226..248 CDD:275380 8/24 (33%)
leucine-rich repeat 272..294 CDD:275380 4/22 (18%)
LRR_8 279..328 CDD:290566 18/50 (36%)
leucine-rich repeat 295..317 CDD:275380 11/22 (50%)
leucine-rich repeat 318..340 CDD:275380 7/22 (32%)
LRR_8 340..396 CDD:290566 13/79 (16%)
leucine-rich repeat 364..386 CDD:275380 4/44 (9%)
PDZ_signaling 770..846 CDD:238492 7/35 (20%)
lron-15NP_495322.3 LRR_8 95..155 CDD:290566
leucine-rich repeat 120..144 CDD:275380
LRR_RI <144..348 CDD:238064 11/45 (24%)
LRR_8 144..205 CDD:290566
leucine-rich repeat 145..168 CDD:275380
leucine-rich repeat 169..194 CDD:275380
leucine-rich repeat 195..217 CDD:275380
LRR_8 217..274 CDD:290566
leucine-rich repeat 218..239 CDD:275380
leucine-rich repeat 240..263 CDD:275380
leucine-rich repeat 264..311 CDD:275380 1/4 (25%)
LRR_8 289..346 CDD:290566 10/43 (23%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..356 CDD:275380 6/19 (32%)
LRR_RI <338..498 CDD:238064 41/170 (24%)
leucine-rich repeat 361..383 CDD:275380 6/21 (29%)
leucine-rich repeat 384..405 CDD:275380 7/20 (35%)
LRR_8 408..473 CDD:290566 14/68 (21%)
leucine-rich repeat 409..432 CDD:275380 0/22 (0%)
leucine-rich repeat 433..462 CDD:275380 13/32 (41%)
LRR_8 461..522 CDD:290566 12/67 (18%)
leucine-rich repeat 463..487 CDD:275380 3/23 (13%)
leucine-rich repeat 488..511 CDD:275380 4/22 (18%)
LRR_8 510..568 CDD:290566 19/58 (33%)
LRR_4 510..551 CDD:289563 13/41 (32%)
leucine-rich repeat 512..533 CDD:275380 5/21 (24%)
LRR_4 533..573 CDD:289563 15/39 (38%)
leucine-rich repeat 534..557 CDD:275380 8/22 (36%)
leucine-rich repeat 558..581 CDD:275380 8/22 (36%)
LRR_8 583..642 CDD:290566 14/58 (24%)
leucine-rich repeat 584..607 CDD:275380 4/22 (18%)
LRR_RI <607..799 CDD:238064 44/205 (21%)
leucine-rich repeat 608..631 CDD:275380 4/22 (18%)
LRR_8 630..688 CDD:290566 20/57 (35%)
leucine-rich repeat 632..655 CDD:275380 11/22 (50%)
leucine-rich repeat 656..676 CDD:275380 6/19 (32%)
leucine-rich repeat 680..703 CDD:275380 4/22 (18%)
leucine-rich repeat 704..749 CDD:275380 4/44 (9%)
leucine-rich repeat 726..739 CDD:275378 0/12 (0%)
LRR_8 748..808 CDD:290566 14/73 (19%)
leucine-rich repeat 750..771 CDD:275380 6/28 (21%)
leucine-rich repeat 774..797 CDD:275380 6/28 (21%)
LRR_8 797..856 CDD:290566 13/67 (19%)
LRR_RI <798..982 CDD:238064 34/200 (17%)
leucine-rich repeat 798..845 CDD:275380 10/47 (21%)
LRR_8 845..904 CDD:290566 11/70 (16%)
leucine-rich repeat 846..869 CDD:275380 4/30 (13%)
leucine-rich repeat 870..893 CDD:275380 4/26 (15%)
leucine-rich repeat 894..915 CDD:275380 3/20 (15%)
LRR_8 938..998 CDD:290566 11/62 (18%)
leucine-rich repeat 940..963 CDD:275380 4/22 (18%)
leucine-rich repeat 964..987 CDD:275380 1/22 (5%)
leucine-rich repeat 988..1009 CDD:275380 9/23 (39%)
leucine-rich repeat 1038..1064 CDD:275380 5/26 (19%)
leucine-rich repeat 1113..1139 CDD:275380 6/28 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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