DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lap1 and lrrd1

DIOPT Version :10

Sequence 1:NP_611007.1 Gene:Lap1 / 36670 FlyBaseID:FBgn0033984 Length:849 Species:Drosophila melanogaster
Sequence 2:XP_002934640.2 Gene:lrrd1 / 100490254 XenbaseID:XB-GENE-985410 Length:757 Species:Xenopus tropicalis


Alignment Length:853 Identity:200/853 - (23%)
Similarity:354/853 - (41%) Gaps:162/853 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EVIDKL------DYSNTPLTDFPEVWQHERTLEELYLSTTRLQALPPQLFYCQGLRVLHVNSNNL 75
            :|.|.|      |.:|.|.|    |.....::..:.|::..|..:||.:|.|..|:.|.:::|.:
 Frog    14 QVEDNLKNLVPSDSNNMPRT----VPSGTGSITSINLNSKELTEIPPDVFRCTNLQCLLLSNNFM 74

  Fly    76 ESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISLQELLLN 140
            ..:|.::..|.:|:.|.|..|.:|::|.||.|...||.|:::.|.:..||..|:.|.::::|..|
 Frog    75 THLPTSLCHLSKLEILSLEGNALVSLPPEICSLSQLTALNVNHNQIAVLPHEISGLKNIKQLFAN 139

  Fly   141 ETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGELKSLRE 205
            ...|..||...|.|..|::|.:..|::.|||.|...|.||..|::.||:.:.||:.|..|..|.:
 Frog   140 NNKLSQLPPCLGDLTTLQVLCISGNSMKTLPDSTASLKNLHVLNLDGNQISALPKAVFRLSQLVK 204

  Fly   206 LWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPFSVGMLK 270
            |.:..|||:.:...||.|::|:....:.|.|..||.:|.|..::|.|::..|.|.|....:..||
 Frog   205 LCLSGNQIKSLPKEIGDLKNLRELSLSSNQLTFLPVQLYNLTSLEELTLDDNKLTAISDKLQNLK 269

  Fly   271 SLVTFKCESNGLTELPDSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQLRQLPDEL 335
            .|......:|.||::.:.:.:...:|.|.|:.|::.|||:.|..||:|:.|..:.|.|..|||:|
 Frog   270 QLKVLSIANNLLTDITEKVCWCPAIECLKLNGNQMYRLPTKIHNLRNLKELHIERNALEMLPDQL 334

  Fly   336 CSCQQLSVLSVANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDNQSQPL 400
            .....|||:..|||.|..:|..:.|.:::..|::..|.::.:|.::.::.:|..:.|:.|:...:
 Frog   335 AHLNNLSVIVCANNNLLWIPIELKNCNQITKLDLSGNKLSEVPQALSSMTSLLYLNLNQNEIHEI 399

  Fly   401 V-------PLQYLDASTKTQLTCFM--------LPQVTFKMNSIQAQQQAQEQYEFVYANQQQPH 450
            .       .|::|:.| ..:||.|.        |..:....|.|.:...|....|.:  ::...|
 Frog   400 ANSIIHNRKLEHLELS-GNKLTVFSVHFCGLHNLAYLDLSRNEINSVPSAISNLESL--SELLLH 461

  Fly   451 ASPSRRICFAEEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLM----RSPTPYPKELRQ 511
            ::..||... |...:.|..|...:.|....|     |:...:...:|.:    .|...:|:||..
 Frog   462 SNKFRRFPI-ELCALKSLQKIDLSGNQIETV-----PSGISLLEGLRYVNLSNNSFKVFPRELFS 520

  Fly   512 MSKYVRQAQAATSSANASEVREARVVTNGQIHCDSNNANQDVVDQATTSAIYGIAPETTHIYGVY 576
            :|        :..:...|:....::::.........|..:..:.......:.|...|..::..:.
 Frog   521 VS--------SLETLKISQKDGRKLISLPDELSKLKNLKELEISDNNIKTLPGSIGEMKNLVQLT 577

  Fly   577 QQPQQMAHPVPTQEYYGLPL-VNYEAHYQQLYVEAN--TPLPTTHLNGDQDYELQPLQQQPMQQQ 638
            ....|:.|         ||. ::..|..|||.::.|  |.|| :.::|     ||.|::..:.. 
 Frog   578 ATSNQLYH---------LPASISSLAALQQLSLKGNQLTSLP-SDISG-----LQKLREINLDS- 626

  Fly   639 ALPTPRLEPPP--------YHIARVYTKKTPEDLNLYESMRQRKQQQQLQEQTIYQDALNSNSNF 695
               .|.|.||.        |.|.|..                  |...|:::.|.|      ..|
 Frog   627 ---NPMLRPPSLLCDGKRLYPIGRYL------------------QSADLRDEKILQ------KTF 664

  Fly   696 KTTAIGAQDVEESVDQLDYQNNISNNLEPNPEEE-----------DQELDDTMSQHSLNSTATNN 749
            |.                    ||||:   |.|:           |:|:...:...||...    
 Frog   665 KL--------------------ISNNI---PAEDFSFFCKKLRIKDEEVKGIVKNRSLQLP---- 702

  Fly   750 TSKASHKKSTWIFGVHKNPTVKQVTLKWEN-----SIGFDIAELLNQVGIFVSSITPNTNAARLL 809
                              ..:.||...|::     :...||||.|.:| :.:..:......|.:.
 Frog   703 ------------------DKILQVLNMWKSERHPQTAPEDIAEQLIRV-LLMCDLHSAALKANVF 748

  Fly   810 NLNDKLLE 817
            .:|.|.::
 Frog   749 KINTKAIK 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lap1NP_611007.1 LRR 12..407 CDD:443914 120/402 (30%)
leucine-rich repeat 21..41 CDD:275380 6/25 (24%)
leucine-rich repeat 42..64 CDD:275380 6/21 (29%)
leucine-rich repeat 65..87 CDD:275380 5/21 (24%)
leucine-rich repeat 88..110 CDD:275380 9/21 (43%)
leucine-rich repeat 111..133 CDD:275380 8/21 (38%)
leucine-rich repeat 134..156 CDD:275380 7/21 (33%)
leucine-rich repeat 157..179 CDD:275380 8/21 (38%)
leucine-rich repeat 180..202 CDD:275380 8/21 (38%)
leucine-rich repeat 203..225 CDD:275380 8/21 (38%)
leucine-rich repeat 226..248 CDD:275380 7/21 (33%)
leucine-rich repeat 272..294 CDD:275380 4/21 (19%)
leucine-rich repeat 295..317 CDD:275380 9/21 (43%)
leucine-rich repeat 318..340 CDD:275380 8/21 (38%)
leucine-rich repeat 364..386 CDD:275380 3/21 (14%)
PDZ_canonical 778..846 CDD:467153 9/45 (20%)
lrrd1XP_002934640.2 LRR 1..407 CDD:443914 119/396 (30%)
leucine-rich repeat 42..63 CDD:275380 6/20 (30%)
leucine-rich repeat 64..86 CDD:275380 5/21 (24%)
leucine-rich repeat 87..109 CDD:275380 9/21 (43%)
leucine-rich repeat 110..132 CDD:275380 8/21 (38%)
leucine-rich repeat 133..155 CDD:275380 7/21 (33%)
leucine-rich repeat 156..178 CDD:275380 8/21 (38%)
leucine-rich repeat 179..201 CDD:275380 8/21 (38%)
leucine-rich repeat 202..224 CDD:275380 8/21 (38%)
LRR 222..619 CDD:443914 97/428 (23%)
leucine-rich repeat 225..247 CDD:275380 7/21 (33%)
leucine-rich repeat 248..270 CDD:275380 6/21 (29%)
leucine-rich repeat 271..316 CDD:275380 13/44 (30%)
leucine-rich repeat 340..385 CDD:275380 12/44 (27%)
leucine-rich repeat 386..408 CDD:275380 3/21 (14%)
leucine-rich repeat 409..431 CDD:275380 6/22 (27%)
leucine-rich repeat 478..500 CDD:275380 4/26 (15%)
leucine-rich repeat 501..520 CDD:275380 5/18 (28%)
leucine-rich repeat 550..572 CDD:275380 2/21 (10%)
leucine-rich repeat 573..595 CDD:275380 4/30 (13%)
leucine-rich repeat 596..618 CDD:275380 9/27 (33%)
Death 664..744 CDD:260017 21/125 (17%)

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