DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ADPS and Ldhd

DIOPT Version :9

Sequence 1:NP_001188935.1 Gene:ADPS / 36669 FlyBaseID:FBgn0033983 Length:631 Species:Drosophila melanogaster
Sequence 2:NP_001008893.1 Gene:Ldhd / 307858 RGDID:1308107 Length:501 Species:Rattus norvegicus


Alignment Length:459 Identity:112/459 - (24%)
Similarity:179/459 - (38%) Gaps:94/459 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 RIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITCPQNESRMICALDTSQMNRLLW 221
            |.||.||||:..|:|.:|..|.....|.::|||.||.|.|.:...|..   :| :..:.|::::.
  Rat    76 RPPDAVVWPQNVDQVSRLASLCYNQGVPIIPFGTGTGVEGGVCAVQGG---VC-ISLTHMDQIME 136

  Fly   222 LNRENLTVCFESGIVGQDLERVLRSEGLTVGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLV 286
            ||.|:.:|..|.|:..:.|...||:.||....:|.:  .::|.|..||.|||.....||.:.|.|
  Rat   137 LNTEDFSVVVEPGVTRKALNTHLRNSGLWFPVDPGA--DASLCGMAATGASGTNAVRYGTMRDNV 199

  Fly   287 VRVRMVTPSGTLERECSAPR----VSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLA 347
            :.:.:|.|.|.|.......|    .:.|.:...:.:|||||||:||...|::.|.|......:.|
  Rat   200 INLEVVLPDGRLLHTAGRGRHYRKSAAGYNLTGLFVGSEGTLGIITSATLRLHPAPEATVAATCA 264

  Fly   348 FPNFEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDL 412
            ||:.:..|....::.:.....|.:..:|.                 .::||..:.       ..|
  Rat   265 FPSVQAAVDSTVQILQAAVPVARIEFLDE-----------------VMMDACNRH-------SKL 305

  Fly   413 NQICAATLL--FEGDLKDVQRQEALIYEIAEKFQGFPAGGQ-NGERGYILTFVIAYIRDFGLHQG 474
            |...|.||.  |.|.      |:||    ||:.|...|..| ||                |.|..
  Rat   306 NCPVAPTLFLEFHGS------QQAL----AEQLQRTEAITQDNG----------------GSHFS 344

  Fly   475 IVAESFETSVPWDRCSLLCRSVKQRVVSECSKRSINYYTISCRVTQTYDAGACIYFYFG---FRS 536
            ...|:.:.:..|                 .::.:..|..::.|      .|..|..:.|   |..
  Rat   345 WAKEAEKRNELW-----------------AARHNAWYAALALR------PGRVIVGHVGDGNFHC 386

  Fly   537 TDVADPVELFE-----AIEHSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRH 596
            ..:.:|.::.|     |...:.....|:..|:.:..||:|..:....:..|...|.......|..
  Rat   387 ILLVNPDDVEEQRRVKAFAENLGRRALALHGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKDT 451

  Fly   597 LDPK 600
            |||:
  Rat   452 LDPR 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ADPSNP_001188935.1 GlcD 152..612 CDD:223354 112/459 (24%)
FAD_binding_4 159..300 CDD:279851 48/140 (34%)
FAD-oxidase_C 337..608 CDD:280983 50/275 (18%)
LdhdNP_001008893.1 GlcD 46..454 CDD:223354 110/456 (24%)
FAD_binding_4 78..214 CDD:279851 48/141 (34%)
FAD-oxidase_C 255..455 CDD:280983 49/272 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D824020at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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