DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcf11 and pcf11

DIOPT Version :9

Sequence 1:NP_610999.4 Gene:Pcf11 / 36658 FlyBaseID:FBgn0264962 Length:1953 Species:Drosophila melanogaster
Sequence 2:NP_001123416.1 Gene:pcf11 / 100170197 XenbaseID:XB-GENE-5846364 Length:1698 Species:Xenopus tropicalis


Alignment Length:1925 Identity:476/1925 - (24%)
Similarity:695/1925 - (36%) Gaps:580/1925 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHIIVKVVEYYISQVAPEFKLPILYL 73
            |:|.||   :|.|||:||..||||.|||||:|||||:.:|..||.::|..|::.....|||::||
 Frog     8 REDARR---DYQSSLEDLTFNSKPHINMLTILAEENVQFAKDIVILIEAQIAKARATEKLPVMYL 69

  Fly    74 IDSIVKNVKSSYVQLFGQCIVNIFLHAFESVQHSQSQVLEKVRERMYALRQTWNEVFPPSKMYAL 138
            :|||||||...|:..|.:.:|..|:..||.|.       |..|:.:|.||.||:|:||..|:|||
 Frog    70 MDSIVKNVGRDYLAAFAKNLVTTFICVFEKVD-------ENTRKSLYKLRSTWDELFPSKKLYAL 127

  Fly   139 DVKVKRLDNNWPITAKQPTNKIHVN-PAIHVNPDFL-KPGLVP------GMPGNPTITS------ 189
            ||:|.::|..||:....|    :|| .:|||||.|| ||...|      ..|..|...:      
 Frog   128 DVRVSQIDPAWPVKPLPP----NVNTSSIHVNPKFLNKPEESPPAKASAPSPAPPRAANSEAQKH 188

  Fly   190 -DMEEILQ----AKTRELLELKKRKLELELEQTKKHLEEQERQLTQTTDAMVGAPII------MP 243
             ..|::::    .|.::||||:::|||||||||::.|         .|......|::      ||
 Frog   189 LSQEQLIRQQLLVKQKQLLELQQKKLELELEQTREQL---------ATSLSSSKPVVSPKIPHMP 244

  Fly   244 APTPAAICPPITDPGIAVHNQRAPGVMGNVGPVMHNMPVAPQLFANKPKVHPVNPALLNSVRQRD 308
            ...|    ||:::      ..:.|.....:......|||.                      .||
 Frog   245 VKAP----PPVSE------KSKVPAPTQRIEKSHEKMPVP----------------------TRD 277

  Fly   309 PRLAR-QMHAA----SSH---------------PAAPARNDPRLEAKSSSSQKSSRSRSKSPVRN 353
            |||.: ..|:|    ..|               |..|..||   :|.:|:.|:.::|..|.|.|.
 Frog   278 PRLVKGNQHSAHGKDQGHKKEMKSNMACMPDLKPIKPLLND---KANASAKQEKAKSNEKLPKRE 339

  Fly   354 SSSRSGKSGSSSHSS-----SSSRKRSESKSSTTSSSSSSSDVR-HKGVTASSSN---QPTVKR- 408
            ......|..|.|.|.     |..|.:|:...:......|..|.| ||.:...|.:   :|..|| 
 Frog   340 LVQSELKDRSKSPSPLKAKLSHMRDKSQGTENVRDLDISRRDPRLHKHLRNKSDDKDAEPKEKRK 404

  Fly   409 -SGKITSKDSDRYVRN-GSPLGSAKRKSSSPSSSPSKSKRSTSHKSSSSRGKTSSLRSRSRSPVF 471
             ..|...|...|...| ..|:.....|:.:.::.|.|:|.........||...|  ||.:.||..
 Frog   405 CDKKEEHKSEHRVAGNRNKPVNGIVPKNETSTNYPDKTKPGRIGNRKRSRSPKS--RSPAHSPKG 467

  Fly   472 MDVDLRTGVRSKSPESRAVAP-SSLPLAGASLPASAKAPKDLEKPTFQILEPGHPPAPPSPPIID 535
            .|      .||.....|:::| .|||..|                  ::.:||...:....  .:
 Frog   468 RD------RRSPKARPRSISPVHSLPKIG------------------RLRQPGSKQSHTED--FN 506

  Fly   536 VSSMDIDLRR-PKTPPPPTFDSVDSLDQKDTTSGHISSTIIQASGASNASPSGASTSKLPAKVSF 599
            .||.:..::| .||      |:.|...||..:.......:...|..||..|              
 Frog   507 ASSREERIKRNAKT------DARDGRRQKRLSEERPQDPVSLISNKSNTEP-------------- 551

  Fly   600 KIQKQFNKLEKSTANLSTVSMLNSNPTTSGTPAASLVRQSSPSPSSSSISSQGNVSDALQLSINK 664
              ::.....:...||....|....|..:....     .|.:..|.....|.|.:           
 Frog   552 --KEDIENWQGPKANKRWKSGWEDNKNSQNDD-----HQGNRPPYQRHNSWQNS----------- 598

  Fly   665 LLQVQGGAGEKRPADALPPHIDGEEQPPQQKRSKS-----AKLDALFGSEDVDLRREILVVKPGV 724
               .:|.|..:.|.......:|.:.:.|::..|.|     .|.:..|...:: ...|:|||...:
 Frog   599 ---TKGVASPRAPKQQHWLSVDADLKIPKELTSASKAELLKKANERFSLGEI-THDELLVVVHQI 659

  Fly   725 ---IVVEDDSMDECDVDKPTKKS-GSPPKK-------ATLEELRAKL------------------ 760
               ...:::.......|.||::: |:..||       .|..|.:|||                  
 Frog   660 RQLFQYQEEKQRGSVWDSPTEENKGALRKKPLLSNPETTYYEHKAKLKRTQVQHAFADREYMDPE 724

  Fly   761 ---------ANSARIQNKQGKS-DK--SRDQAVSQRLKQLAELKVNDDSQEAHD-----EKVRTI 808
                     |:|.|.....|:: ||  .|::...:|.:....|......::|||     |..|.:
 Frog   725 YLDMELDEMAHSGRDGELSGRAEDKMPERNEQFPERQRLSPLLGTRHPDEDAHDGYRRHEDQREL 789

  Fly   809 LSQAQEMYENNGMNQEQYKDLVQKVVAINENSKIKESRRRDNDLERNAARDAVLRKRIPKLKGNE 873
            ....:|  |...:..|::.   :.|...:|:.:.......|:.:..|.|.        |||...|
 Frog   790 SKGLRE--EPRPLFPERFP---RSVPMYDESEEAPYEENADSRMSGNKAN--------PKLPLME 841

  Fly   874 NHSAGSPHTDGSPRYDDQPAAAP-----EKPSNKRDKTKREMK------------------RRKP 915
            ..   .|..|..|........||     |:|||..:  .||..                  :|..
 Frog   842 ER---RPLLDIPPLIPVNRGDAPILKSFEEPSNVAN--VRESSPVNACMPFDGASGNQVGPQRFE 901

  Fly   916 TKWGEQVDAGAAQRTAWQLANV----------NNNNNNNNNKRGGIQ---------LPVQPQAGF 961
            ...|:.|||......|.|:.|.          |:.......|..|.|         :.|:...|.
 Frog   902 AVSGQPVDAHFDSMGANQVENTRFDGMMGQPKNHQGPQGMQKYDGAQNQPIVSSQPVGVKRLEGP 966

  Fly   962 RGMP-----WQQPPAMVLG----QSAVPPPPQPPSMISMPPVPP-----VTMTKAINSLDNPMAD 1012
            .|.|     ::.||:..||    :.|...|..|.....|..:.|     |...:..:....|:..
 Frog   967 PGQPMNAARFEGPPSQQLGAPRFEGAAGQPVGPQRFEGMQQLGPQRFEGVAGPQRFDGSPRPLMQ 1031

  Fly  1013 VVRSITIDG------------------GSK--EIRFYNQVAIIFMDGDQPHEIGFQPGQRVIFID 1057
            .    ..||                  |.:  .:||...|...| :.:||......||       
 Frog  1032 Q----RFDGIPCQPMRFEQPMRFEASQGQQLGPVRFEGPVGPRF-EVNQPQRFDSGPG------- 1084

  Fly  1058 HNEPLPLCFND----DYKPFHLDG---------QLHRIRFGFPSRELYIDEHWYEIYFGGPAVSV 1109
               |.||...|    ..:| ..||         :.|..||..|.:...        .|.||    
 Frog  1085 ---PQPLMRFDGPMGQMRP-RFDGTPGNRFDNQRPHMQRFDMPGQPCQ--------RFEGP---- 1133

  Fly  1110 PIGNKLHIIKAEGP----PPNVDIGRVRRDLVVGKINMIADAHTIVPLFLDA--RQQTFQLG--- 1165
                        ||    ||..|          |.:.:.......:|...|.  :|..|:|.   
 Frog  1134 ------------GPGHQTPPRFD----------GPMQVQPRFDGPLPQRFDGPNQQPRFELSMNH 1176

  Fly  1166 -----------AEQHSLQFVDSFQYA----LLDGQLQKM---------------------EYGGL 1194
                       ..|::..|..|..|.    ...||.|.|                     ..|.|
 Frog  1177 QGPRFDNIHPPVRQNAPPFGQSGPYGEPQNHFHGQPQNMPPQGLPPQGMLPQGLPHQGMQPQGLL 1241

  Fly  1195 PKGMMLNG-------------------------------------------------GRSC---- 1206
            |:||:.||                                                 |..|    
 Frog  1242 PQGMLPNGMQPQGMLPQGMPPQGIPPQGMQQQGMPLQRPEQRFDLPQGPNFAGPSGPGVQCFPNQ 1306

  Fly  1207 --------------------FIRFGTLPKGVIAGKTHVADMVYIKTDAPAEPPKP-----PPIIV 1246
                                |..|..||.|.:               ||::|..|     .|..:
 Frog  1307 LPRPSGPYFDDKNPKPQGPQFANFNNLPVGNL---------------APSQPFGPLGGMSQPAGI 1356

  Fly  1247 KPPPVVEQP----KPAPVA-----VAPI------------SLPAAAAALESLNINDLFQKLVSSG 1290
            ..|..:.||    :||..:     |.|:            |.|.....|..|::|:||.||:|:|
 Frog  1357 SQPTAISQPSGMSQPAFSSQDQNYVPPLGSAGGVFVQPGGSFPFPENHLGQLDVNELFSKLLSTG 1421

  Fly  1291 IIGGATAAPT--LPAADSSAAKEPTASATEPSTASATVAPATLPAGPPAEPIKRIDLRKPESIKT 1353
            ||...|...|  ..|.:|||   |.|:..|...|...        |...:.:..:...:.|.:|.
 Frog  1422 IIQKVTPNETSSTQATESSA---PAAAEEEEEDADGD--------GDEDQDVPDLTTFQMEDLKQ 1475

  Fly  1354 RQAAVVAVLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRERDSTRKATSRKWYYDLNDWRQ 1418
            |..:|:..||.|:||.|||:||...||..|:.|||||:||||.|:|.:||.|.|:|||.|.||.:
 Frog  1476 RYDSVINRLYTGIQCYSCGMRFTKSQTDIYADHLDWHYRQNRTEKDVSRKITHRRWYYSLKDWIE 1540

  Fly  1419 YEEIEDVEEREKN-FLEAQGQPGGVEALDELSQQRSLDSPVPTCAAGRDDVDHCCDMCHEKFEQF 1482
            :|||.|:|||.|: |.|...:...::..:...::..|.  ||...||.|::   |::|.|:|||:
 Frog  1541 FEEIADLEERAKSQFFEKVHEEVILKTQEAAKEKEFLS--VPAGPAGADEI---CEICQEQFEQY 1600

  Fly  1483 YNEELEEWHLRSAIRVEDKIYHPLCYEDYKASLNPPTEVKSDQDVDMNNTDDNAMDTLIKVEDDE 1547
            ::||.|||||::|:|:.||||||.||||||.:.:......|.....:.| ..|||..|:|.|..|
 Frog  1601 WDEEEEEWHLKNAMRMNDKIYHPSCYEDYKNTSSFLDSTPSPSKTLLEN-PLNAMLNLVKEEVTE 1664

  Fly  1548 DEGTPNSSQPIFEDDDDDVIVLPNEEPSVTEIVDDDDEDE 1587
                |..|  :.|:..|.......|.|.:|||..:..|.|
 Frog  1665 ----PTCS--VKEEPADYTASSCCEIPLLTEIKKEPAEPE 1698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pcf11NP_610999.4 CID 17..134 CDD:239621 54/116 (47%)
Siah-Interact_N 187..255 CDD:286164 23/84 (27%)
Stathmin 736..>839 CDD:279209 29/145 (20%)
pcf11NP_001123416.1 CID_Pcf11 12..138 CDD:340779 64/135 (47%)
PTZ00121 <319..796 CDD:173412 110/548 (20%)
Med15 911..>1357 CDD:312941 85/510 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I1637
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 379 1.000 Inparanoid score I2023
OMA 1 1.010 - - QHG47777
OrthoDB 1 1.010 - - D164040at33208
OrthoFinder 1 1.000 - - FOG0004735
OrthoInspector 1 1.000 - - oto104667
Panther 1 1.100 - - LDO PTHR15921
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1755
SonicParanoid 1 1.000 - - X5074
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.200

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