DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ciao1 and AT4G32990

DIOPT Version :9

Sequence 1:NP_610996.1 Gene:Ciao1 / 36655 FlyBaseID:FBgn0033972 Length:335 Species:Drosophila melanogaster
Sequence 2:NP_195025.5 Gene:AT4G32990 / 829436 AraportID:AT4G32990 Length:328 Species:Arabidopsis thaliana


Alignment Length:335 Identity:150/335 - (44%)
Similarity:205/335 - (61%) Gaps:37/335 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LQGHKGRIWGVAWHPKGN-VFASCGEDKAIRIW---SLTGNTWSTKTILSDGHKRTIREIRWSPC 70
            |:||..|:|.|||:|..: |.|||..||.:|||   ||| .:|:.|.    ||:           
plant    16 LEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLT-RSWTCKL----GHR----------- 64

  Fly    71 GQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLATCSRDKSVWIWEV--A 133
                 ..|||..|.:|...:.:.|..:.|.|||:|||||||:.||.|||||.|||||||||:  .
plant    65 -----LGSFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPE 124

  Fly   134 GDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAEEPIDNDWDCTATLT----SHT 194
            .||||:..|||..|::|||.|:||||.|:|.|.|||||||::..|..|.|::|..||:    .|:
plant   125 EDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHS 189

  Fly   195 STVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGVATPDQQTVWKCVCTVSGQHSRAIYDVS 259
            ||||.|.|:|.|:::|:||||..:|||:.    :.:.:.:.:....|..|||:||.|.|.||.|.
plant   190 STVWSISFNAAGDKMVTCSDDLAVKIWKT----DISRMQSGEGYVPWTHVCTLSGFHDRTIYSVH 250

  Fly   260 WCKLTGLIATACGDDGIRIFKESSDSKPDEPTFEQITAEEGAHDQDVNSVQWNPVVAGQLI-SCS 323
            |.: .|:||:..|||.|::|.:|.....|.|:::.:..:|.||:.|||||||.|....:|: |.|
plant   251 WSR-DGVIASGAGDDTIQLFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQWAPDKESRLLASAS 314

  Fly   324 DDGTIKIWKV 333
            ||..:||||:
plant   315 DDKMVKIWKL 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ciao1NP_610996.1 WD40 6..332 CDD:238121 148/332 (45%)
WD40 9..>333 CDD:225201 149/333 (45%)
WD40 repeat 17..57 CDD:293791 19/43 (44%)
WD40 repeat 63..101 CDD:293791 7/37 (19%)
WD40 repeat 106..145 CDD:293791 28/40 (70%)
WD40 repeat 152..191 CDD:293791 21/38 (55%)
WD40 repeat 197..248 CDD:293791 18/50 (36%)
WD40 repeat 255..299 CDD:293791 15/43 (35%)
WD40 repeat 306..331 CDD:293791 13/25 (52%)
AT4G32990NP_195025.5 WD40 6..>326 CDD:225201 150/335 (45%)
WD40 12..323 CDD:238121 148/332 (45%)
WD40 repeat 23..65 CDD:293791 21/62 (34%)
WD40 repeat 95..136 CDD:293791 28/40 (70%)
WD40 repeat 143..185 CDD:293791 22/41 (54%)
WD40 repeat 192..239 CDD:293791 18/50 (36%)
WD40 repeat 246..289 CDD:293791 15/43 (35%)
WD40 repeat 296..322 CDD:293791 13/25 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 54 1.000 Domainoid score I4162
eggNOG 1 0.900 - - E1_KOG0645
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55850
Inparanoid 1 1.050 341 1.000 Inparanoid score I640
OMA 1 1.010 - - QHG54160
OrthoDB 1 1.010 - - D793298at2759
OrthoFinder 1 1.000 - - FOG0005834
OrthoInspector 1 1.000 - - otm3255
orthoMCL 1 0.900 - - OOG6_102166
Panther 1 1.100 - - O PTHR19920
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4225
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.