DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ercc1 and Ercc1

DIOPT Version :9

Sequence 1:NP_477468.1 Gene:Ercc1 / 36654 FlyBaseID:FBgn0028434 Length:259 Species:Drosophila melanogaster
Sequence 2:NP_001099698.1 Gene:Ercc1 / 292673 RGDID:1306992 Length:298 Species:Rattus norvegicus


Alignment Length:249 Identity:122/249 - (48%)
Similarity:170/249 - (68%) Gaps:12/249 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PTAA---KQPKVDAPAATAVNPAPSNSTEPSGSGRPAPG-------KPASNPHCVLVHSKQRGNP 73
            ||||   ..|...|..|.|..|..:.:|.|:|| .||.|       |..:....::|..:|||||
  Rat    48 PTAASTHSAPLTYAEYAIAQPPGGAGATVPTGS-EPATGDSPSQTLKAGTKSSSIIVSPRQRGNP 111

  Fly    74 ILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVDT 138
            :||.:.:||.|| .::.||||:|:::|.|:|||:||||:||||.:||::|||.:.|||||||||.
  Rat   112 VLKFVRSVPWEF-GEVTPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDV 175

  Fly   139 PEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALT 203
            .:|..|||.|.:|.:|||.|::|||:|||||:.:||||.:|::|.||:||::|.|...:....||
  Rat   176 KDPQQALKELAKICILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLT 240

  Fly   204 NIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQEPFL 257
            .:|.|||||:..||.|||:|..:|.||.|.|:...||||:||::|::.|.||||
  Rat   241 TVKSVNKTDSQTLLTTFGSLEQLITASREDLALCPGLGPQKARRLFEVLHEPFL 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ercc1NP_477468.1 RAD10 1..257 CDD:227566 120/247 (49%)
DUF1556 <26..70 CDD:284914 13/50 (26%)
Rad10 62..176 CDD:281785 64/113 (57%)
HHH_5 202..254 CDD:291205 27/51 (53%)
Ercc1NP_001099698.1 ERCC1_C-like 99..226 CDD:411729 72/126 (57%)
uvrC <251..291 CDD:234792 18/36 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343591
Domainoid 1 1.000 144 1.000 Domainoid score I4499
eggNOG 1 0.900 - - E1_COG5241
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1501
Inparanoid 1 1.050 232 1.000 Inparanoid score I3348
OMA 1 1.010 - - QHG56876
OrthoDB 1 1.010 - - D1336192at2759
OrthoFinder 1 1.000 - - FOG0005138
OrthoInspector 1 1.000 - - oto96360
orthoMCL 1 0.900 - - OOG6_102832
Panther 1 1.100 - - LDO PTHR12749
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4160
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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