DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ercc1 and ercc1

DIOPT Version :9

Sequence 1:NP_477468.1 Gene:Ercc1 / 36654 FlyBaseID:FBgn0028434 Length:259 Species:Drosophila melanogaster
Sequence 2:NP_001096608.1 Gene:ercc1 / 100001425 ZFINID:ZDB-GENE-040426-2606 Length:342 Species:Danio rerio


Alignment Length:270 Identity:122/270 - (45%)
Similarity:171/270 - (63%) Gaps:30/270 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EMPTAAKQPKVDAPAATAVNPAPSNSTEPSGSGRPAP-----------------GKPASN----- 59
            |..|:|.|.:.:||..::.|.|...|...|.:....|                 |:..|:     
Zfish    67 EKQTSAAQSRNNAPGQSSANIAVIESVNTSSTDSEKPETEQQGLSEGPTEDQTKGEGQSSESFVV 131

  Fly    60 -PH------CVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYIC 117
             ||      .::|..:||||||||.:.|||.|| .::|||||:|||:|.|:||::||||||:|:.
Zfish   132 PPHLLGSGNSIIVSPRQRGNPILKFVRNVPWEF-GEVVPDYVLGRTTCALFLSVRYHNLNPNYVH 195

  Fly   118 QRLKALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRP 182
            :|||.||:.:.||:||||||..:|::|||.|.||.::||.|::|||:.||||:.:||||.:||:|
Zfish   196 ERLKQLGQSFSLRILLVQVDVKDPHHALKELARICIMADCTLILAWSPEEAGRYLETYKSYEKKP 260

  Fly   183 PDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKK 247
            .||:.|:||.|...::...||.:|.||||||..||.||.:|..||.||:|.|....||||:||::
Zfish   261 ADLLKEQVEKNYLSQVTDCLTTVKSVNKTDAMTLLSTFSSLEGIIKASKEELVLCPGLGPQKARR 325

  Fly   248 LYKTLQEPFL 257
            ||..|.:||:
Zfish   326 LYDVLHQPFI 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ercc1NP_477468.1 RAD10 1..257 CDD:227566 121/268 (45%)
DUF1556 <26..70 CDD:284914 12/72 (17%)
Rad10 62..176 CDD:281785 65/113 (58%)
HHH_5 202..254 CDD:291205 29/51 (57%)
ercc1NP_001096608.1 Rad10 141..254 CDD:281785 65/113 (58%)
HHH_5 280..330 CDD:291205 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583834
Domainoid 1 1.000 149 1.000 Domainoid score I4395
eggNOG 1 0.900 - - E1_COG5241
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1501
Inparanoid 1 1.050 227 1.000 Inparanoid score I3462
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1336192at2759
OrthoFinder 1 1.000 - - FOG0005138
OrthoInspector 1 1.000 - - oto38648
orthoMCL 1 0.900 - - OOG6_102832
Panther 1 1.100 - - LDO PTHR12749
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1423
SonicParanoid 1 1.000 - - X4160
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.790

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