DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC2 and AgaP_AGAP011425

DIOPT Version :9

Sequence 1:NP_610995.1 Gene:SMC2 / 36653 FlyBaseID:FBgn0027783 Length:1179 Species:Drosophila melanogaster
Sequence 2:XP_554796.1 Gene:AgaP_AGAP011425 / 1278267 VectorBaseID:AGAP011425 Length:1187 Species:Anopheles gambiae


Alignment Length:1171 Identity:630/1171 - (53%)
Similarity:867/1171 - (74%) Gaps:0/1171 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRASALQDL 65
            ||:|.:|:|||||||||||::||||||.|||||||:||||||||||||||||||.:|||::||||
Mosquito     1 MYIKSIVIDGFKSYGRRTEVQGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRATSLQDL 65

  Fly    66 VYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFLINGKLVQNKKVQDF 130
            |||:|||||||||||::|||:||.|||.|||.|||||:|||:|||||||:|||||.||||:|||.
Mosquito    66 VYKSGQAGITKATVTLIFDNSNPNQCPIGYETCREISITRQIVVGGKNKYLINGKSVQNKRVQDL 130

  Fly   131 FCSIQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSQYKTKRDATKTLIEKKETKVRET 195
            |||:||||||||||||||:|.:||||||.|:|||:|||||||.|:.|||:...|||||:.|:.|.
Mosquito   131 FCSVQLNVNNPNFLIMQGRITKVLNMKPAEILSMIEEAAGTSMYEAKRDSALKLIEKKDAKLNEL 195

  Fly   196 KVLLDEEVLPKLVKLRQERSAYQEYQKICRDIDFLIRIHISAKYLKQCETLKTVEANEHKIEDRI 260
            ..::.||:.|||.|||:||..|.|:||:||||::|.|:::|.:||:.|:.::..|.....::..|
Mosquito   196 YAVIREEIEPKLEKLRKEREHYIEFQKVCRDIEYLTRLYVSYRYLQLCKGVEESERTIANLQSVI 260

  Fly   261 ANCKATHAKNLAEVESIENSVKEMQQQIDAEMGGSIKNLETQLSAKRALEATATGSLKAAQGTIQ 325
            ...:.....|.|..:::|...||:|::||.|.||.:..||.||:.:...|||........:.:|.
Mosquito   261 GESEQKIESNCATAQTLEQEAKELQERIDTEGGGVLGELEQQLAVESKKEATVAAERNTMKDSIG 325

  Fly   326 QDEKKIRMASKNIEDDERALAKKEADMAKVQGEFESLKEADARDSKAYEDAQKKLEAVSQGLSTN 390
            |:::|::...|:|.|||:|||.||.:|.:....|::||:|...|.:|:..|||:.||||.|||||
Mosquito   326 QEQRKLKNLQKSIRDDEQALAGKEVEMQRRGESFQALKDACEADEQAFAKAQKRFEAVSAGLSTN 390

  Fly   391 ENGEASTLQEQLIVAKEQFSEAQTTIKTSEIELRHTRGVLKQREGETQTNDAAYVKDKKLHDQLV 455
            |:|||:|||:|||.||::.:||.|.||.||:||:|::.:|:.::....::||||::||:...::.
Mosquito   391 EDGEAATLQDQLIAAKQKSAEATTAIKQSEMELKHSQQLLRDKQKNMNSSDAAYLEDKRKLTKVE 455

  Fly   456 VEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRCNASRYDLQYQDPEPNFDRRKV 520
            .:|..|||:|||..||.|..|.|..||..|....|.|:.||||.||.|::|||:||||.||||.|
Mosquito   456 GQIGQLERELQSTGYEEGSMETLAGRRQALQQEVRGLRSELDRRNAHRWELQYRDPEPGFDRRSV 520

  Fly   521 RGLVGKLFQVKDMQNSMALVQTAGGSLYSYVTDDDVTSKKILQRGNLQRRVTLIPINKIQSGSLN 585
            :|:|.||..|||.:.:.||...|||||||.:||.|.||||:||:|.||.|.|:||:|||....::
Mosquito   521 KGMVAKLVTVKDPKYAQALGTVAGGSLYSVITDTDTTSKKLLQKGQLQTRTTMIPLNKISGRKID 585

  Fly   586 RNVVEYAQNKVGAENVQWAMSLIDYDRYYEPVMKFCFGGTLICKDLIVAKQISYDPRINCRSVTL 650
            .:|..:|:..||.|||..|:|.|.||...:..|:|.||.:.|.|:|.:|.:|::.|||..|||||
Mosquito   586 PSVARFAEELVGKENVTTALSCISYDPEVDQAMQFAFGHSFIVKNLEIANKITFHPRIKTRSVTL 650

  Fly   651 EGDVVDPHGTVSGGAAPKGANVLEELHAIKQIEKEYREIDSEIAQVEKQIASIENQALAFNKMKE 715
            :||||||.||:||||..||..||.::..|.:|:...:|.::|:..:..:::.||..|..|.::||
Mosquito   651 DGDVVDPGGTLSGGARAKGNAVLLDVAEINRIQAMLQEKEAELRDISAEVSKIEKTAHRFGQLKE 715

  Fly   716 NLDLRQHELTMCENRLAQTTFQQNQAEIEEMRERVKTLEQQIIDSREKQKTSQAKIVDIEAKLAD 780
            ..|:..:||...:.|||||:|||.:.||||:.::::||::.|:::||.|....||:.|::||:||
Mosquito   716 QHDMLNYELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIAD 780

  Fly   781 AKGYRERELNAATNEIKVTKQRAEKSRANWKKREQEFETLQLEITELQKSIETAKKQHQEMIDNL 845
            .||:|||||.:|..::|.:|:::|:||.||||.||:||||:|||.||||.|.|||:|..::.:.:
Mosquito   781 GKGHRERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQI 845

  Fly   846 EKFKAELDALKVNSSSAASEVTELEQAIKEQKDKLRDQNKEMRNQLVKKEKMLKENQEIELEVKK 910
            ...:..|..:...:....:.||.|:|.||:.|:|:..|:||::.:..:::|:||:|.|::||:||
Mosquito   846 AALQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKK 910

  Fly   911 KENEQKKISSDAKEAKKRMEALEAKYPWIPEEKNCFGMKNTRYDYSKEDPHEAGNKLAKMQEKKD 975
            ||||..|:.::.|:...|:..:|.|||||||:|..||:|||||||:||||.|||.||.|:|:.||
Mosquito   911 KENEITKVRNENKDGYDRISGMEQKYPWIPEDKEFFGVKNTRYDYNKEDPQEAGRKLKKLQDSKD 975

  Fly   976 KMERTLNMNAIMVLDREEENFKETERRRNIVAMDKEKIKKIIVKMDEEEQDQLNKAATEVNTNFS 1040
            ||.|.:|..|:::|:||||.:||..||:.:|..||:||:.||..:|||::.:|..|.:||:.||.
Mosquito   976 KMSRNVNQKAMVLLEREEEQYKEVMRRKKVVEDDKKKIQAIITDLDEEKKKKLKVAWSEVDENFG 1040

  Fly  1041 GIFSSLLPGAEAKLNPVHTNGCLTGLEIKVGFNGIWKESLGELSGGQKSLVALSLVLAMLKFSPA 1105
            .|||:||||.:|:|.|......:.|||:||||||:|||||.||||||:|||||||:|||||:.||
Mosquito  1041 SIFSTLLPGTQARLVPPDGVDFMKGLEVKVGFNGMWKESLTELSGGQRSLVALSLILAMLKYKPA 1105

  Fly  1106 PLYILDEVDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNHANVLFRTLFEEGVSTITRQV 1170
            |||||||||||||:|||||||:|||.|||||||:|||||||:||:|||||||.|.:|:|.:||.|
Mosquito  1106 PLYILDEVDAALDLSHTQNIGNMLKAHFTNSQFIIVSLKDGMFNNANVLFRTKFIDGMSGVTRTV 1170

  Fly  1171 S 1171
            :
Mosquito  1171 N 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC2NP_610995.1 Smc 1..1168 CDD:224117 627/1166 (54%)
ABC_SMC2_euk 1..>170 CDD:213240 136/168 (81%)
SMC_hinge 520..637 CDD:214944 56/116 (48%)
V_Alix_like 690..933 CDD:187408 98/242 (40%)
P-loop_NTPase <1073..1167 CDD:304359 76/93 (82%)
AgaP_AGAP011425XP_554796.1 Smc 1..1172 CDD:224117 630/1171 (54%)
ABC_SMC2_euk 1..>156 CDD:213240 125/154 (81%)
SMC_hinge 519..637 CDD:214944 56/117 (48%)
Prefoldin 712..850 CDD:238453 65/137 (47%)
DUF342 <815..911 CDD:302792 37/95 (39%)
P-loop_NTPase <1063..1167 CDD:304359 83/103 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 1253 1.000 Domainoid score I80
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4705
Inparanoid 1 1.050 1266 1.000 Inparanoid score I536
OMA 1 1.010 - - QHG54206
OrthoDB 1 1.010 - - D11228at50557
OrthoFinder 1 1.000 - - FOG0003760
OrthoInspector 1 1.000 - - oto107952
Panther 1 1.100 - - LDO PTHR43941
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3124
TreeFam 1 0.960 - -
1312.940

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