DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC2 and SMC2

DIOPT Version :10

Sequence 1:NP_610995.1 Gene:SMC2 / 36653 FlyBaseID:FBgn0027783 Length:1179 Species:Drosophila melanogaster
Sequence 2:XP_554796.2 Gene:SMC2 / 1278267 VectorBaseID:AGAMI1_014026 Length:1187 Species:Anopheles gambiae


Alignment Length:1171 Identity:630/1171 - (53%)
Similarity:867/1171 - (74%) Gaps:0/1171 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRASALQDL 65
            ||:|.:|:|||||||||||::||||||.|||||||:||||||||||||||||||.:|||::||||
Mosquito     1 MYIKSIVIDGFKSYGRRTEVQGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRATSLQDL 65

  Fly    66 VYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFLINGKLVQNKKVQDF 130
            |||:|||||||||||::|||:||.|||.|||.|||||:|||:|||||||:|||||.||||:|||.
Mosquito    66 VYKSGQAGITKATVTLIFDNSNPNQCPIGYETCREISITRQIVVGGKNKYLINGKSVQNKRVQDL 130

  Fly   131 FCSIQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSQYKTKRDATKTLIEKKETKVRET 195
            |||:||||||||||||||:|.:||||||.|:|||:|||||||.|:.|||:...|||||:.|:.|.
Mosquito   131 FCSVQLNVNNPNFLIMQGRITKVLNMKPAEILSMIEEAAGTSMYEAKRDSALKLIEKKDAKLNEL 195

  Fly   196 KVLLDEEVLPKLVKLRQERSAYQEYQKICRDIDFLIRIHISAKYLKQCETLKTVEANEHKIEDRI 260
            ..::.||:.|||.|||:||..|.|:||:||||::|.|:::|.:||:.|:.::..|.....::..|
Mosquito   196 YAVIREEIEPKLEKLRKEREHYIEFQKVCRDIEYLTRLYVSYRYLQLCKGVEESERTIANLQSVI 260

  Fly   261 ANCKATHAKNLAEVESIENSVKEMQQQIDAEMGGSIKNLETQLSAKRALEATATGSLKAAQGTIQ 325
            ...:.....|.|..:::|...||:|::||.|.||.:..||.||:.:...|||........:.:|.
Mosquito   261 GESEQKIESNCATAQTLEQEAKELQERIDTEGGGVLGELEQQLTVESKKEATVAAERNTMKDSIG 325

  Fly   326 QDEKKIRMASKNIEDDERALAKKEADMAKVQGEFESLKEADARDSKAYEDAQKKLEAVSQGLSTN 390
            |:::|::...|:|.|||:|||.||.:|.:....|::||:|...|.:|:..|||:.||||.|||||
Mosquito   326 QEQRKLKNLQKSIRDDEQALAGKEVEMQRRGESFQALKDACEADEQAFAKAQKRFEAVSAGLSTN 390

  Fly   391 ENGEASTLQEQLIVAKEQFSEAQTTIKTSEIELRHTRGVLKQREGETQTNDAAYVKDKKLHDQLV 455
            |:|||:|||:|||.||::.:||.|.||.||:||:|::.:|:.::....::||||::||:...::.
Mosquito   391 EDGEAATLQDQLIAAKQKSAEATTAIKQSEMELKHSQQLLRDKQKNMNSSDAAYLEDKRKLTKVE 455

  Fly   456 VEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRCNASRYDLQYQDPEPNFDRRKV 520
            .:|..|||:|||..||.|..|.|..||..|....|.|:.||||.||.|::|||:||||.||||.|
Mosquito   456 GQIGQLERELQSTGYEEGSMEALVGRRQALQQEVRGLRSELDRRNAHRWELQYRDPEPGFDRRSV 520

  Fly   521 RGLVGKLFQVKDMQNSMALVQTAGGSLYSYVTDDDVTSKKILQRGNLQRRVTLIPINKIQSGSLN 585
            :|:|.||..|||.:.:.||...|||||||.:||.|.||||:||:|.||.|.|:||:|||....::
Mosquito   521 KGMVAKLVTVKDPKYAQALGTVAGGSLYSVITDTDTTSKKLLQKGQLQTRTTMIPLNKISGRKID 585

  Fly   586 RNVVEYAQNKVGAENVQWAMSLIDYDRYYEPVMKFCFGGTLICKDLIVAKQISYDPRINCRSVTL 650
            .:|..:|:..||.|||..|:|.|.||...:..|:|.||.:.|.|:|.:|.:|::.|||..|||||
Mosquito   586 PSVARFAEELVGKENVTTALSCISYDPEVDQAMQFAFGHSFIVKNLEIANKITFHPRIKTRSVTL 650

  Fly   651 EGDVVDPHGTVSGGAAPKGANVLEELHAIKQIEKEYREIDSEIAQVEKQIASIENQALAFNKMKE 715
            :||||||.||:||||..||..||.::..|.:|:...:|.::|:..:..:::.||..|..|.::||
Mosquito   651 DGDVVDPGGTLSGGARAKGNAVLLDVAEINRIQAMLQEKEAELRDISAEVSKIEKTAHRFGQLKE 715

  Fly   716 NLDLRQHELTMCENRLAQTTFQQNQAEIEEMRERVKTLEQQIIDSREKQKTSQAKIVDIEAKLAD 780
            ..|:..:||...:.|||||:|||.:.||||:.::::||::.|:::||.|....||:.|::||:||
Mosquito   716 QHDMLNYELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIAD 780

  Fly   781 AKGYRERELNAATNEIKVTKQRAEKSRANWKKREQEFETLQLEITELQKSIETAKKQHQEMIDNL 845
            .||:|||||.:|..::|.:|:::|:||.||||.||:||||:|||.||||.|.|||:|..::.:.:
Mosquito   781 GKGHRERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQI 845

  Fly   846 EKFKAELDALKVNSSSAASEVTELEQAIKEQKDKLRDQNKEMRNQLVKKEKMLKENQEIELEVKK 910
            ...:..|..:...:....:.||.|:|.||:.|:|:..|:||::.:..:::|:||:|.|::||:||
Mosquito   846 AALQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKK 910

  Fly   911 KENEQKKISSDAKEAKKRMEALEAKYPWIPEEKNCFGMKNTRYDYSKEDPHEAGNKLAKMQEKKD 975
            ||||..|:.::.|:...|:..:|.|||||||:|..||:|||||||:||||.|||.||.|:|:.||
Mosquito   911 KENEITKVRNENKDGYDRISGMEQKYPWIPEDKEFFGVKNTRYDYNKEDPQEAGRKLKKLQDSKD 975

  Fly   976 KMERTLNMNAIMVLDREEENFKETERRRNIVAMDKEKIKKIIVKMDEEEQDQLNKAATEVNTNFS 1040
            ||.|.:|..|:::|:||||.:||..||:.:|..||:||:.||..:|||::.:|..|.:||:.||.
Mosquito   976 KMSRNVNQKAMVLLEREEEQYKEVMRRKKVVEDDKKKIQAIITDLDEEKKKKLKVAWSEVDENFG 1040

  Fly  1041 GIFSSLLPGAEAKLNPVHTNGCLTGLEIKVGFNGIWKESLGELSGGQKSLVALSLVLAMLKFSPA 1105
            .|||:||||.:|:|.|......:.|||:||||||:|||||.||||||:|||||||:|||||:.||
Mosquito  1041 SIFSTLLPGTQARLVPPDGVDFMKGLEVKVGFNGMWKESLTELSGGQRSLVALSLILAMLKYKPA 1105

  Fly  1106 PLYILDEVDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNHANVLFRTLFEEGVSTITRQV 1170
            |||||||||||||:|||||||:|||.|||||||:|||||||:||:|||||||.|.:|:|.:||.|
Mosquito  1106 PLYILDEVDAALDLSHTQNIGNMLKAHFTNSQFIIVSLKDGMFNNANVLFRTKFIDGMSGVTRTV 1170

  Fly  1171 S 1171
            :
Mosquito  1171 N 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC2NP_610995.1 SMC_N 2..1162 CDD:481474 624/1159 (54%)
SMC2XP_554796.2 None

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