DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC2 and map6

DIOPT Version :9

Sequence 1:NP_610995.1 Gene:SMC2 / 36653 FlyBaseID:FBgn0027783 Length:1179 Species:Drosophila melanogaster
Sequence 2:XP_012811923.1 Gene:map6 / 100145271 XenbaseID:XB-GENE-995345 Length:412 Species:Xenopus tropicalis


Alignment Length:460 Identity:90/460 - (19%)
Similarity:161/460 - (35%) Gaps:129/460 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   651 EGDVVDP-----HGTVSGGAAPKGANVLEELHAIKQIEKEYREIDSEIAQVEK----QIASI--- 703
            :||:..|     :..|:.||:...|::.:     .|.......|:::.|.||.    |:.|.   
 Frog    21 KGDIAVPLVFTKYSEVTEGASQHHAHLQQ-----PQARHSSAAIETQPAVVEADHGGQVGSTKDL 80

  Fly   704 --ENQALAFNKMKENLDLRQHELT-------MCENRLAQTTFQQNQAEIEEMRERVKTLEQQIID 759
              :...|..:||:....:||....       .|:.::   .:|.::|...:..:..|..:...|.
 Frog    81 PQQQPGLGLDKMQTGSVMRQDYKAWKVKPEPSCKPKI---EYQPSEAPFHKETQYQKDFKAWPIP 142

  Fly   760 SREKQ----KTSQAKIVDIEAKLADAKGYRERELNAATN-------EIKVTKQRAEKSRANWKKR 813
            .|...    |.||.    :.|..|.::..|::....|..       :::..:|...|.:|:    
 Frog   143 RRGDHPWIPKPSQG----LTAPTASSEAKRKKPAVTAPESRPAEPAKVEAAEQVVPKVKAS---- 199

  Fly   814 EQEFETLQLEITELQKSIETAKKQHQEMIDNLEKFKAELDALKVNSSSAASEVTELEQAIKEQKD 878
             ..|..|.::        |||.|      ||.||        |....|.:..:.......:|..|
 Frog   200 -VTFSGLPIK--------ETAPK------DNPEK--------KSREKSPSGRLQADGMRPREAAD 241

  Fly   879 KLRDQNKE-------MRNQL-----VKKEKMLKENQEIELEVKKKENEQKKISSDAKEAKKRMEA 931
            .|..|.||       .||:.     ||..|.:|...:.:      ..|:|.:...:.:|..:.  
 Frog   242 MLNRQIKEEGGAGSSYRNEFRPWTDVKPVKPIKAKSQYQ------PPEEKVVHETSYKATFKG-- 298

  Fly   932 LEAKYPWIPEEKNCFGMKNTRYDYSKEDPHEAGNKLAKMQEKKDKMERTLNMNAIMVLDREEENF 996
             |:..|...:.|.   |:..|......:|.:..:|:.|...:..|.::|            ..:.
 Frog   299 -ESNQPAAGDNKL---MERRRIRSLYSEPSKESSKVEKPSVQTSKPKKT------------STSH 347

  Fly   997 KETER-RRNIVAMDKEKIKK-----IIVKMDEEEQDQLNKAATEVNTNFSGIFSSLLPGAEAKLN 1055
            |..:: :..|:|..:...||     ...|.:|:|:.:      |:|...          ||||.|
 Frog   348 KPVKKAKEKIMASGRASKKKGAESSSTTKPEEKEKSK------EINNKL----------AEAKEN 396

  Fly  1056 PVHTN 1060
            |.|.|
 Frog   397 PAHPN 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC2NP_610995.1 Smc 1..1168 CDD:224117 90/460 (20%)
ABC_SMC2_euk 1..>170 CDD:213240
SMC_hinge 520..637 CDD:214944
V_Alix_like 690..933 CDD:187408 53/281 (19%)
P-loop_NTPase <1073..1167 CDD:304359
map6XP_012811923.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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