DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm2b and pgm2

DIOPT Version :9

Sequence 1:NP_610992.2 Gene:Pgm2b / 36649 FlyBaseID:FBgn0033969 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001016701.1 Gene:pgm2 / 549455 XenbaseID:XB-GENE-1006723 Length:610 Species:Xenopus tropicalis


Alignment Length:605 Identity:266/605 - (43%)
Similarity:384/605 - (63%) Gaps:15/605 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GEEDLDLQIKNWVMWDRNEATLQQVTEAVRDQDWKALRVRLCHRITYLTTGLRGVMRAGFDSLND 88
            |:..||..:.:|:.||:|..||:.|.:.|.|...:.|:.....|:.:.|.|||..|..|...:||
 Frog     9 GDARLDKAVTDWLTWDKNPKTLELVKQMVADGKKEDLQACFGSRMEFGTAGLRAAMGPGISQMND 73

  Fly    89 VVIIEVAQGICAYLVDAYPSIQKRQTQGVVVGYDGRY------NSKRFAQLIATVFLNNDFKVFL 147
            :.||:..||.|.||......:::|   |||:|||.|.      :|||||:|.||.|::...||::
 Frog    74 LTIIQTTQGFCRYLEKNINDLKER---GVVIGYDARAHPASGGSSKRFARLAATTFVSQGIKVYM 135

  Fly   148 FTRMIPTPFIPFTVVTLQCLAGIVVTASHNVKEDNGIKVYWSNGAQAMAPHDQRIHDYMMNNLEP 212
            |:.:.||||:|:.|..|:..|||:||||||.|:|||.||||.||||.:.|||..|...:..||||
 Frog   136 FSDITPTPFVPYAVTHLKLCAGIMVTASHNPKQDNGYKVYWENGAQIIPPHDSGIAQSIEENLEP 200

  Fly   213 KPSSWETSLVLDHPLVEDPYRQIYPLFYEALKTLIPPIYLETNECSQLRFIYTALHGVGYPFMRE 277
            .|::|:..::.|..|::|||:.|...:::.::...  .:.:.|:.|:::|::|::||||:.|::.
 Frog   201 WPTAWDDIVIDDSSLLQDPYQSINKDYFKDIQKHC--FHRDINKASKVKFVHTSVHGVGHKFVQS 263

  Fly   278 AFYQARLKPVIPVVEQKEADPEFPTLVKPNPEEGKEALKLAIKKADAEHCTLVLANDPDVDRLAV 342
            ||......|.:||.|||:.||||.|:..|||||||..|||:...|:.|...::||||||.|||||
 Frog   264 AFKAFDFSPPLPVEEQKDPDPEFTTVKYPNPEEGKGVLKLSFALAEKEGARIILANDPDADRLAV 328

  Fly   343 AELDPRGRWKLFNGNELGALLGWWALENYKTRTPKP-AVTNCIMIATLVSSRILAAMARVEGFIF 406
            ||....|.||:|:|||||||||||....:|.:...| ||.|..|:|:.|||:||.|:|..|||.|
 Frog   329 AEKQESGEWKVFSGNELGALLGWWIFTCWKEKNQDPEAVKNVYMLASTVSSKILRAIAVKEGFHF 393

  Fly   407 VEGMPSFPWMAHRALELEKSGRTVLFAFEECFGYMFGMSLPDKDGIGAAMQLASMACYLRSTRNV 471
            .|.:..|.||.:||.:|...|:||||||||..|||....:.||||:.||:..|.:|.|| :|:||
 Frog   394 EETLTGFKWMGNRAKQLIDQGKTVLFAFEEAIGYMCCPFVLDKDGVSAAVIAAELASYL-ATKNV 457

  Fly   472 TLIEKLREIYDTYGYHSSISSVYMADSPETITSVFDHLRNFTDEEGYPKFILDEEFEVVHIRDLT 536
            ||.::|..|::.||||.|.:|.::....:||..:|:||||:..|:.|||  |..:.:|..:||||
 Frog   458 TLTQQLNSIFNKYGYHISQNSYFICYDQKTIHDLFEHLRNYNGEKAYPK--LCGKIDVSSVRDLT 520

  Fly   537 IGLDTSFSDGKARMPVTPDAQLITFTFTNGYVVTLRSAPNDIKIKLNAEICGLPEEKQWEELHDK 601
            .|.|::..|.||.:|.:..:|:|||||.||.|.|:|::..:.|||..||:|..|....::.|..:
 Frog   521 TGYDSNQPDNKAILPTSKSSQMITFTFANGGVATMRTSGTEPKIKYYAELCAAPGNSDFDMLKKE 585

  Fly   602 LNRMTNAVVEEFLQPEENGL 621
            |:.:.:|:.|.|.|||:|.|
 Frog   586 LDDLADAIEEYFFQPEKNKL 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm2bNP_610992.2 PTZ00150 26..621 CDD:240294 264/601 (44%)
PGM2 67..607 CDD:100092 245/546 (45%)
pgm2NP_001016701.1 PTZ00150 13..610 CDD:240294 265/601 (44%)
PGM2 52..591 CDD:100092 245/546 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 159 1.000 Domainoid score I4031
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H6693
Inparanoid 1 1.050 582 1.000 Inparanoid score I997
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1041556at2759
OrthoFinder 1 1.000 - - FOG0002126
OrthoInspector 1 1.000 - - mtm9452
Panther 1 1.100 - - O PTHR45745
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1578
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

Return to query results.
Submit another query.