DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm2b and pgm-2

DIOPT Version :10

Sequence 1:NP_610992.2 Gene:Pgm2b / 36649 FlyBaseID:FBgn0033969 Length:628 Species:Drosophila melanogaster
Sequence 2:NP_001022872.1 Gene:pgm-2 / 176749 WormBaseID:WBGene00012803 Length:595 Species:Caenorhabditis elegans


Alignment Length:609 Identity:225/609 - (36%)
Similarity:348/609 - (57%) Gaps:40/609 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LDLQIKNWVMWDRNEATLQQVTEAVRDQDWKALRVRLCHRITYLTTGLRGVMRAGFDSLNDVVII 92
            ||.|:.:|:.||:|:....::.:.|.:::..||:.|:..|:.:.|.|:|..|:|||..|||:.||
 Worm     8 LDKQVADWLAWDKNDKNRNEIQKLVDEKNVDALKARMDTRLVFGTAGVRSPMQAGFGRLNDLTII 72

  Fly    93 EVAQGICAYLVDAYPSIQKRQTQGVVVGYDGRYNSKRFAQLIATVFLNNDFKVFLFTRMIPTPFI 157
            ::..|...::::.|    .:...||.:|:||||||:|||:|.|.||:.|:..|:||:.:.|||.:
 Worm    73 QITHGFARHMLNVY----GQPKNGVAIGFDGRYNSRRFAELSANVFVRNNIPVYLFSEVSPTPVV 133

  Fly   158 PFTVVTLQCLAGIVVTASHNVKEDNGIKVYWSNGAQAMAPHDQRIHDYMMNNLEPKPSS--WETS 220
            .:..:.|.|.||:::|||||.|||||.|.|||||||.:.|||..|  ..:...||:|..  |:.|
 Worm   134 SWATIKLGCDAGLIITASHNPKEDNGYKAYWSNGAQIIGPHDTEI--VRIKEAEPQPRDEYWDLS 196

  Fly   221 LVLDHPL------VEDPYRQIYPLFYEALKTLIPPIYLETNECSQLRFIYTALHGVGYPFMREAF 279
            .:...||      |.|||       :|..|:|  ....|.|..:.|:|.|:|.||:||.:.:..|
 Worm   197 ELKSSPLFHSADVVIDPY-------FEVEKSL--NFTREINGSTPLKFTYSAFHGIGYHYTKRMF 252

  Fly   280 --YQARLKPVIPVVEQKEADPEFPTLVKPNPEEGKEALKLAIKKADAEHCTLVLANDPDVDRLAV 342
              :.......|.|.||::.:|:|||:..||||||::.|.||::.||....|::||||||.||:.:
 Worm   253 AEFGFPASSFISVAEQQDPNPDFPTIPFPNPEEGRKVLTLAMETADKNGSTVILANDPDADRIQM 317

  Fly   343 AELDPRGRWKLFNGNELGALLGWWALENYKTRTPKPAVTNCIMIATLVSSRILAAMARVEGFIFV 407
            ||....|.|::|.|||:|||:.||...|::...|....:...::.:.|||:|:..:|..|||...
 Worm   318 AEKQKDGEWRVFTGNEMGALITWWIWTNWRKANPNADASKVYILNSAVSSQIVKTIADAEGFKNE 382

  Fly   408 EGMPSFPWMAHRALELEKSGRTVLFAFEECFGYMFGMSLPDKDGIGAAMQLASMACYLRSTRNVT 472
            ..:..|.||.:||.||...|..|:.|:||..|||.|.:: ||||:.||...|.:|.:|.: ...:
 Worm   383 TTLTGFKWMGNRAEELRADGNQVILAWEESIGYMPGHTM-DKDGVSAAAVFAEIAAFLHA-EGKS 445

  Fly   473 LIEKLREIYDTYGYHSSISSVYMADSPETITSVFDHLR---NFTDEEGYPKFILDEEFEVVHIRD 534
            |.::|..:|:.||:|...|:.:|..:||....:|..||   .|..:.|        |.||..:||
 Worm   446 LQDQLYALYNRYGFHLVRSTYWMVPAPEVTKKLFSTLRADLKFPTKIG--------EAEVASVRD 502

  Fly   535 LTIGLDTSFSDGKARMPVTPDAQLITFTFTNGYVVTLRSAPNDIKIKLNAEICGLPEEKQ--WEE 597
            ||||.|.|..|.|..:|::..::::||....|.|.|||::..:.|||...|:...|.:.|  .|.
 Worm   503 LTIGYDNSKPDNKPVLPLSTSSEMVTFFLKTGSVTTLRASGTEPKIKYYIELITAPGKTQNDLES 567

  Fly   598 LHDKLNRMTNAVVEEFLQPEENGL 621
            :..:::::...||...|:|::.||
 Worm   568 VISEMDQLEKDVVATLLRPQQFGL 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm2bNP_610992.2 PTZ00150 26..621 CDD:240294 223/607 (37%)
pgm-2NP_001022872.1 PTZ00150 7..595 CDD:240294 225/609 (37%)

Return to query results.
Submit another query.