DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spred and vaspa

DIOPT Version :9

Sequence 1:NP_001260979.1 Gene:Spred / 36643 FlyBaseID:FBgn0020767 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_001103922.1 Gene:vaspa / 555805 ZFINID:ZDB-GENE-070424-68 Length:412 Species:Danio rerio


Alignment Length:309 Identity:73/309 - (23%)
Similarity:111/309 - (35%) Gaps:70/309 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLASGHDYIIYGQR-ISDQSVILSCVINRDL 77
            ||.||..|:.::.|:| ||.|...||   |..:...:|...:.:.|:: .:||.|:::|.:.|.:
Zfish    10 RATVMLYDDGSKRWMP-AGSGAQAVS---RIHIFQNSSSCSFRVVGRKQQADQQVVINCPLVRGM 70

  Fly    78 KYYKVMPTFHHWRAGKQRNGLTFQTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSV 142
            ||.:..||||.||..:|..||.|.:..:|..|..|:::|    :|.|:.:....:|.|..:....
Zfish    71 KYNQATPTFHQWRDARQVWGLNFGSKEEASQFASGIMQA----LDMLSGNTDAGVCAPPPRPPQN 131

  Fly   143 GEDDVFMTLDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTSATTSPPD 207
            |          |...|..||.....:..|:..:...........||||.........|....||.
Zfish   132 G----------PSAEELEQKRRQEQQERERQEQERLERERRASAPPPPPSAPPPAPASGPPPPPG 186

  Fly   208 APPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPVGAQVLNA--------------- 257
            .|||...|.|                          |....|.|.....|               
Zfish   187 PPPAPGPPPP--------------------------PPPPPPSGGGAPPAPPPPSGGGGGGGGGG 225

  Fly   258 -------RRESISALKKRNALE---AAQAMAAAQTAAGGGLACRDGGSG 296
                   ...:::..|.|...:   ...|.||:.::.|||.....||.|
Zfish   226 GGGGDGGLASALAGAKLRKVAKDDSGGPAPAASASSGGGGGGSSGGGGG 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpredNP_001260979.1 EVH1_SPRED-like 9..122 CDD:269978 36/108 (33%)
Sprouty 315..413 CDD:282994
vaspaNP_001103922.1 EVH1_Ena_VASP-like 5..114 CDD:269918 37/111 (33%)
VASP_tetra 374..408 CDD:285929
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.