DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn6 and psmd11a

DIOPT Version :10

Sequence 1:NP_725412.2 Gene:Rpn6 / 36638 FlyBaseID:FBgn0028689 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001159710.1 Gene:psmd11a / 503934 ZFINID:ZDB-GENE-030131-2711 Length:421 Species:Danio rerio


Alignment Length:421 Identity:284/421 - (67%)
Similarity:349/421 - (82%) Gaps:2/421 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 AGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQEGKAKEL 83
            |.|..|:|||:|.|.:| .....:|:.:|: ::..::|||.:|:|||.||:.|.|..:.|:|.||
Zfish     3 ATAVEFQRAQSLLSTDR-NASIDILHAIVK-RDVQDDDEEAVRVKEQSILELGGLLAKTGQAAEL 65

  Fly    84 ADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 148
            ..|:|..||||:||||||||:|||||:||||||:|.||.||:||.:||||||.||||||||:|||
Zfish    66 GGLLKYVRPFLNSISKAKAARLVRSLLDMFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 130

  Fly   149 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 213
            ||::|||||..|.|||.||:|||:||||:|||.||||:|||||||||||||||||||||||||||
Zfish   131 RLVSLYFDTKRYQEALQLGSQLLQELKKMDDKALLVELQLLESKTYHALSNLPKARAALTSARTT 195

  Fly   214 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML 278
            |||||||||:|.|||:||||:|||:|:|:|||:|||||||||:||:||.:|:|:|||||||||||
Zfish   196 ANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPRAITALKYMLLCKIML 260

  Fly   279 GQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTL 343
            ...:||..|:|||||:.|:||..:|:|.||:||..||||||:.||.|||.||.:|.|:..||..|
Zfish   261 NSPEDVQSLISGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTEYKAELRDDPIISTHLTKL 325

  Fly   344 YDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 408
            ||.:|||||.|:|||:||||:.|::|.|:|....||:||||||||:||.|||||||||||||:|.
Zfish   326 YDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILDQKFHGILDQGEGVLIVFDEP 390

  Fly   409 PVDKTYERVLETIQSMGKVVDTLYQKAKKLS 439
            |||||||..|||||:|.||||:||.|||||:
Zfish   391 PVDKTYEASLETIQNMSKVVDSLYNKAKKLT 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn6NP_725412.2 RPN6 18..438 CDD:227488 282/418 (67%)
psmd11aNP_001159710.1 RPN6 16..420 CDD:227488 275/405 (68%)

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