Protein Alignment Rpn6 and Cops2

DIOPT Version :9

• Sequence 1: NP_725412.2
• Gene: Rpn6 / 36638
• FlyBaseID: FBgn0028689
• Length: 439
• Species: Drosophila melanogaster
• Sequence 2: XP_006234963.1
• Gene: Cops2 / 261736
• RGDID: 628791
• Length: 450
• Species: Rattus norvegicus
• Alignment Length: 403
• Identity: 95/403 - (23%)
• Similarity: 177/403 - (43%)
• Gaps: 48/403 - (11%)

  Fly    31 SSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQ-QGELYKQEGKAKELADLIKVT---- 90
            |..:..|.:..|.|:....:...|:|.:......|.:|: :||  |.|...|.|..:||:.
  Rat    21 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGE--KGEWGFKALKQMIKINFKLT 83

  Fly    91 ---------RPFL----SSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 142
                     :..|    |::::..:.|.:.|::|........:..   ||:  ::..::...|.|
  Rat    84 NFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNSDF---LCQ--MDLLQEFYETTL 143

  Fly   143 RQSLEARLIALYFDT-----ALYTEALALG--AQLLRELKK----------LDDKNLLVEVQLLE 190
            ....:|:...|:|.|     .||.|....|  .::||:|.:          |.....|:|:..||
  Rat   144 EALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALE 208

  Fly   191 SKTYHALSNLPKARAALTSARTTANAIYCP-PKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 254
            .:.|.|..|..|.:|....:....:||  | |.:.|.:....|.:|.. |.:|:.|.:.|:|||:
  Rat   209 IQMYTAQKNNKKLKALYEQSLHIKSAI--PHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFK 270

  Fly   255 GFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADF 319
            .:|...|.:..|.|||::|..:::  ...:|...|.:.....:..:|.||.::..|.....:.:|
  Rat   271 NYDESGSPRRTTCLKYLVLANMLM--KSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEF 333

  Fly   320 QAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQ 384
            :..||.....:.:|..::.|:..|...:..|.|.::|:||:|:.:..:::.:.:.:..||..|.|
  Rat   334 EKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQ 398

  Fly   385 MILDKKFSGILDQ 397
            .|||....|.:||
  Rat   399 CILDNTIHGRIDQ 411

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpn6	NP_725412.2	RPN6	18..438	CDD:227488	95/403 (24%)
		PCI	302..406	CDD:279707	25/96 (26%)
Cops2	XP_006234963.1	RPN6	40..441	CDD:227488	91/384 (24%)
		PCI	316..420	CDD:396121	25/96 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5159
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810