DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mspo and spon1b

DIOPT Version :9

Sequence 1:NP_001286427.1 Gene:mspo / 36632 FlyBaseID:FBgn0020269 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_005174403.1 Gene:spon1b / 58029 ZFINID:ZDB-GENE-000427-10 Length:804 Species:Danio rerio


Alignment Length:607 Identity:137/607 - (22%)
Similarity:213/607 - (35%) Gaps:186/607 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 PPATQPAPQTGCTLDRLAVYKVVLHTYWTRELFPKHYPDWRPTAQWTKTLGRTHNANYALYHIGQ 167
            |.|....|...|.....|.|:|..:..|:.:|.||.||  |....|:..:|.:|..:|.|:..|.
Zfish   183 PVAITEKPAQECCACGTAKYRVTFYGNWSEKLHPKDYP--RRANHWSALIGASHTRSYVLWEYGG 245

  Fly   168 PATAAVKQFAESGRTDLLDS---NAGEQQQVQMQLQSQMQAGKSPSGGISSGTTSFNATAASTAT 229
            .|:..|||.:|.|....::.   ..|:.....::.::|..|.:           ..|..||.:| 
Zfish   246 FASEGVKQVSEYGSPVKMEEEIRQKGDDVMTVIKTKAQWPAWQ-----------PLNIRAAPSA- 298

  Fly   230 PTGGSGGSGGSGGSGGTGTTTAERSVFDEFSMPAIPMGAGRSEAKVFVDSNHSLVSLMTRIVPSP 294
                                        |||                ||....|:|.:|.:.|||
Zfish   299 ----------------------------EFS----------------VDRVRHLMSFLTMLGPSP 319

  Fly   295 DWFIGVDSFELCVGG-SWIDTVTVELDPLDAGTDNGFTFTAPNWPTEPQGVIYRITSRYPGHPAG 358
            ||.:|:...:||... .|:..:..:|.|.|||||:|.::.:||.|:.||..|..:||.  .||..
Zfish   320 DWNVGLSGEDLCTRDCGWVQKLVKDLVPWDAGTDSGVSYESPNKPSIPQERIRPLTSL--DHPQS 382

  Fly   359 SFYYPKSKRLPPI--ATFQFIKLKEYELSE--------VFNIAEDDRKYETVQTQTHLDAEHNHV 413
            .||.|....:.|:  ...:.|..|..:.:.        |.:||:::::......:|.:.:  |..
Zfish   383 PFYDPSGGPMTPLGRVVVERIARKGEQCNTVPDTIDDIVADIAQEEKEEGDNTPETCIYS--NWS 445

  Fly   414 EMNNELSASIERERQTEQQQLQQNDDE-------------------------------------- 440
            ..:...|::.::.|:..|:.|:...|.                                      
Zfish   446 PWSACSSSTCDKGRRMRQRMLKAQLDPNLPCLHTQDFEPCMGPGCSEEEASTCMMSEWISWSPCS 510

  Fly   441 -------RQRIRSQLLAKMNPIYGSNNSLQPAPGQVVSVVPKNDKHAILQSIASSY--------- 489
                   |.|.|   ..|..|..||:.:|   |.:.......||..:....:.:.:         
Zfish   511 ASCGMGMRSRER---YVKQFPEDGSSCTL---PTEETEKCVVNDDCSPSSCVVTEWGEWEPCSVS 569

  Fly   490 ------RR----AADASD--------ANASK---PTPSAI--------GGGKAGGAVGGGAATRR 525
                  ||    ..||||        |.|.|   |..:|:        ..|:...:.|.|..||:
Zfish   570 CGLGMRRRERMMKMDASDGSPCRVQMAEAEKCMMPECNAVVCMLSPWSDWGECSVSCGVGMRTRQ 634

  Fly   526 R---------------------SSAQRRRDCRVSHWSEWTACSKSCGVGEMHRYRKVIKHGKRGG 569
            |                     ...:...||.:|.||.|:.|:||||.|.|.|.|.|....:.||
Zfish   635 RMLKTPVKPGQCPDELEQVEKCMLPECPTDCMLSEWSAWSECNKSCGKGHMIRSRMVKLEPQFGG 699

  Fly   570 RQCPALQQSKWCGTERNCHGSQ 591
            ..||...|.|.|...:...||:
Zfish   700 LPCPETVQRKKCKIRKCSRGSR 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mspoNP_001286427.1 Spond_N 120..363 CDD:283999 66/246 (27%)
TSP1 537..588 CDD:214559 21/50 (42%)
spon1bXP_005174403.1 Reeler 50..179 CDD:260081
Spond_N 200..387 CDD:283999 66/246 (27%)
TSP_1 442..490 CDD:278517 6/49 (12%)
TSP_1 501..546 CDD:278517 9/50 (18%)
TSP_1 558..606 CDD:278517 10/47 (21%)
TSP_1 614..661 CDD:278517 6/46 (13%)
TSP_1 668..716 CDD:278517 21/47 (45%)
TSP1 756..804 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3539
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D240419at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3762
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.850

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