DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mspo and CG30046

DIOPT Version :9

Sequence 1:NP_001286427.1 Gene:mspo / 36632 FlyBaseID:FBgn0020269 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001286341.1 Gene:CG30046 / 36334 FlyBaseID:FBgn0050046 Length:839 Species:Drosophila melanogaster


Alignment Length:665 Identity:141/665 - (21%)
Similarity:232/665 - (34%) Gaps:204/665 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LLALGSL------------------SSKANAVSAYGASFISNPSIY----AYSV----------- 49
            ||.||||                  |.|:.....:..|...||..|    .|:|           
  Fly    12 LLLLGSLVIGRVSSLICTRRPANTGSPKSPVDENFMISVSGNPETYILGQEYNVSLNAFNGHRYI 76

  Fly    50 ------ENQPDERESRDNNIKF----------------AAEHGNLNSNSNL-------------- 78
                  ||:..:....|:..:|                ..|:.|.||.:::              
  Fly    77 SFIMALENENGDFSYNDDLGRFELSDLIETRFSPNCINMVENTNTNSKTHMHLTWVAPSEPGSGC 141

  Fly    79 ---------NRNYYYTDDPSPVSNL-----NPTASLATPPATQPAPQTGCTLDRLAVYKVVLHTY 129
                     :|..::.||......:     :...|..|.||....|...|...|   |:::....
  Fly   142 VLIRATVQQHREVWHMDDGGLTKRICEEVTDDVESQPTAPAAVDVPCCACDEAR---YELIFEGV 203

  Fly   130 WTRELFPKHYPDWRPTAQWTKTLGRTHNANYALYHIGQPATAAVKQFAESGRTDLLDSNAGEQQQ 194
            |:|.|.||.:|......::.:.||..|:::|..:..|:.|:.|:|::||...:.||:...     
  Fly   204 WSRNLHPKDFPTRGWETRFCELLGAAHSSDYRFWESGELASVAMKEYAEHCSSRLLEREF----- 263

  Fly   195 VQMQLQSQMQAGKSPSGGISSGTTSFNATAASTATPTGGSGGSGGSGGSGGTGTTTAERSVFDEF 259
                                  :.:|......|.....|                          
  Fly   264 ----------------------SINFRDQKIRTIIKARG-------------------------- 280

  Fly   260 SMPAIPMGAGRSEAKVFVDSNHSLVSLMTRIVPSPDWFIGVDSFELCVGG-SWIDTVTVELDPLD 323
              |:.|..:.::.|.|.||..|.:||..::|.|||||.:||...|||:.. :|::...:.|.|.|
  Fly   281 --PSYPNISSKTMASVRVDPIHHMVSFASKIEPSPDWIVGVTGLELCLRNCTWMEEKVINLYPWD 343

  Fly   324 AGTDNGFTFTAPNWPTEPQGVIYRITSRYPGHPAGSFYYPKSKRLPPIATFQFIKLKEYELSEVF 388
            .|||:|.|:|:.:.|..|..||.|:.|.:|..|...||......:.|:|   .:.:|...:.|..
  Fly   344 VGTDSGPTYTSSDQPQVPPDVIRRMRSDFPNDPRSPFYDISGTPMKPMA---ILTVKRQRIYERR 405

  Fly   389 NIAEDDRKYETVQTQTHLDAEHNHVEMNNELSASIE-RERQTEQQQLQQ--NDDERQRIRSQLLA 450
            ...||......|..:.......:..:.:::....:: |.|..:|.:|.:  |.:|.|....:...
  Fly   406 CADEDSNNDPDVPRECFTHPWSSWSDCSSKCGVGMQYRRRVYKQPELARVYNCNEAQYEERECQG 470

  Fly   451 KMNPIYGSNNSLQPAPGQVVSVVPKNDKHAILQSIASSYRRAADASDANASKPTPSAIGGGKAGG 515
            :|   .|.||.:                           |...:..|.   :|.|..||      
  Fly   471 EM---CGQNNLM---------------------------REPEEFEDL---EPDPRRIG------ 496

  Fly   516 AVGGGAATRRRSSAQRRRDCRVSHWSEWTACSKSCGVGEMHRYRKVIKHGKRGGRQCPA-----L 575
                     .:.|.|||.:|.:|.|..|:.||.:||.|...|.|:.:  ..:....|..     |
  Fly   497 ---------YQPSQQRRAECELSSWGSWSPCSVTCGDGYEMRQRQYL--NPQAEFDCQGVHRMEL 550

  Fly   576 QQSKWCGTERNCHGS 590
            |:::.| :.|:|.||
  Fly   551 QETRKC-SGRDCLGS 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mspoNP_001286427.1 Spond_N 120..363 CDD:283999 62/243 (26%)
TSP1 537..588 CDD:214559 15/55 (27%)
CG30046NP_001286341.1 Reeler 28..167 CDD:260081 19/138 (14%)
Spond_N 194..382 CDD:283999 62/245 (25%)
TSP1 425..473 CDD:214559 8/50 (16%)
TSP1 510..561 CDD:214559 15/53 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439663
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3539
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D240419at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11311
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

Return to query results.
Submit another query.