DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12866 and hrm

DIOPT Version :9

Sequence 1:NP_001286425.1 Gene:CG12866 / 36630 FlyBaseID:FBgn0033955 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster


Alignment Length:690 Identity:139/690 - (20%)
Similarity:242/690 - (35%) Gaps:183/690 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 NRTRKQSFDMESKNSKESFDFSRGGRRLGSGMVFIYMVIPPDGGFGWVIMVLSFLAQLIIDGLIF 323
            |.:|.::..:.:|...:.:|                 ::|||||:||::::.|.|..::|.|.|.
  Fly    27 NESRHKTVSLINKKDDKEYD-----------------LVPPDGGWGWLVLLGSCLTNILIPGTIK 74

  Fly   324 TIGVLLPSIAQDLDVSISSVSFVASVQIGCYF---TSGAFSAVLINRFGFRKVAIAGVLCSAVSI 385
            :.|||........:.|.:..:::.::   |||   :.|..|::|..::.:|.|.:.|...:::.:
  Fly    75 SFGVLFSEFTDAFNSSPTKAAWIPAL---CYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGM 136

  Fly   386 LASSWSVSLTMLIFFYSVLACAGGITLSMIWASSQLIVGYYFERYRPMANGFSCSGGGAGIVLFT 450
            :.|.|:.|:..|...|.||.   ||...:.:..:..||..||.:.|.:|||...||...|.::..
  Fly   137 ILSFWASSIEFLYISYGVLV---GIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILP 198

  Fly   451 FLNSWLVPIIGWRNMLRTQAGLIMLILLMVVAY-------VEVAPTQVGMYHLPGSSDTSSDEYY 508
            .|..||:...|:........|:.:.:.:..:.|       |.|...:..:.::|...|......:
  Fly   199 PLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRARQALENIPEEEDIGIVMKF 263

  Fly   509 GN------------------------FYVHDYLRQSAMTAKSRSILSTYEPRPKKKGCAKFCPSC 549
            .|                        .|:....|...:.:.|.:::.:|    .|.|        
  Fly   264 ENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFVRSASAAVVQSY----SKSG-------- 316

  Fly   550 SNCCWRRRKKSQ--NADEQNLLIRPAPLEREDLFYTGPAEYEKPH------------SKENVDGK 600
            .....|.||.|.  ...::|....|..|..:...|..|......:            ||.:....
  Fly   317 DEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTS 381

  Fly   601 EFLL-------------------------MGS-------DKNTQQVNYGIKNIRVDDEPDRISRV 633
            .||.                         |||       |...|..:|...:.|           
  Fly   382 SFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDAR----------- 435

  Fly   634 HRERRWSNENQKKQNSCRNSRFMLTVLKLFDYRLLKQFEFKILVAS-----------AFLFP--- 684
                   .:.|:.|.|           |.||..|||...:.:::.|           ..|.|   
  Fly   436 -------GQAQQPQRS-----------KFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFG 482

  Fly   685 --MGFNIPFVYSSARTTIPVEYARMIGPIIGISNLVMRNILGILAYKRRSW-TLGLCGCGLIFGG 746
              .|||...   ||.....|....:||.|.|       :.|..:.|..::| .:|    ||...|
  Fly   483 EARGFNKSL---SAYLLSVVSATDLIGRIGG-------SALSDMGYIPKTWYFVG----GLSISG 533

  Fly   747 VSVLISAF---YGENLIWFQFLYGFSYAVAPAVYSTLRGLIYVKYLGLSKLTNAFGITSLAMGMG 808
            :|:.:..|   |.....|.. |:|    :|..:|..:..:|....||..:||:::||:....|:.
  Fly   534 LSLALLPFAWTYSSVCFWCA-LFG----LASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLL 593

  Fly   809 AFIGTTIAGKLIGITGNYSAAFCFAGLCLIVSGFLKLLLP 848
            ..:|..:.........:|:..|...||.|:....|...:|
  Fly   594 QLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGASLWSFMP 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12866NP_001286425.1 MFS 308..>484 CDD:119392 44/185 (24%)
MFS 675..>839 CDD:119392 42/183 (23%)
hrmNP_001286141.1 2A0113 49..653 CDD:273325 135/651 (21%)
MFS 59..>234 CDD:119392 44/180 (24%)
MFS <449..633 CDD:119392 46/202 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.