DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12866 and gem-1

DIOPT Version :9

Sequence 1:NP_001286425.1 Gene:CG12866 / 36630 FlyBaseID:FBgn0033955 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001379120.1 Gene:gem-1 / 181458 WormBaseID:WBGene00008214 Length:771 Species:Caenorhabditis elegans


Alignment Length:714 Identity:143/714 - (20%)
Similarity:262/714 - (36%) Gaps:205/714 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 DGGFGWVIMVLSFLAQLIIDGLIFTIGVLLPSIAQDLD----VSISSVSFVASVQIGCYFTSGAF 360
            |||:||::::.|||...:.||..|..|::...|.:...    ||:.:.|...|:.:.....:|..
 Worm    68 DGGYGWLVVLASFLMHAVCDGASFCFGIVFVKIQEHFQCGRFVSMITASMFLSLPLIMSPVAGIV 132

  Fly   361 SAVLINRFGFRKVAIAGV-LCSAVSILASSWSVSLTMLIFFYSV---LACAGGITLSMIWASSQL 421
            |.:|    |.|...|.|. :|:...|:|...|     .|||:.:   |.|  |:.:|.|:.::.:
 Worm   133 SDIL----GCRMSIIIGASICTVSCIIAMFCS-----HIFFFMISFGLGC--GVGMSFIYNAAIV 186

  Fly   422 IVGYYFERYRPMANGFSCSGGGAGIVLF-TFLNSWLVPIIGWRNMLRTQAGLIMLILLMVVAYVE 485
            ||.||||:.|.:|..|:.||.|.|.|:: ..||..::.:..:.:.:|      ::::...|.|..
 Worm   187 IVTYYFEKRRGLATSFAVSGTGVGTVIYPILLNLSMIYLASFVSDIR------IILIFFAVMYFV 245

  Fly   486 VAPTQVGMYHLPGSSDTS--------------SDEYYGNFYVHDYLRQSAMTAKSRSILSTY--- 533
            :|.....:..:...||.:              .||...|....|...:.|::..:.:||:.:   
 Worm   246 IAVIGFFIKDVEWESDKTDFKLRKFQKYIAKMDDEKENNTNPTDAFMRHAISLPNLNILNNHSGS 310

  Fly   534 -------------EPRP-KKKGCAKF-------------------------------CPSCSNCC 553
                         ..:| :.|..|.|                               .|..:...
 Worm   311 IQSICDAAKAERKSDKPTRSKSVALFDNKHQMSSIPEYSMLNTNLANLEHLDLELANSPCTTVRA 375

  Fly   554 WRRR---KKSQNADEQNLLIRPAPLERE----DLFYTGPA-----EYEKPHSKENVDGKEFLLMG 606
            .|||   |.|.:.|:.|      .||.|    :||.:...     |.....|:.:.||.......
 Worm   376 QRRRVISKVSMSVDQIN------ELEDEAFHINLFQSSTESESDDESSSDDSEMSNDGDSSSSEL 434

  Fly   607 SDKN-----TQQVNYGIKNI--------------------------------------------- 621
            |:||     |:.:|..::|:                                             
 Worm   435 SEKNLDEPTTKLINKNLENVAFRATSSVPNSARMNRNSVAAGTSNMFGGRVIASNAIQSRHATNL 499

  Fly   622 ----RVDDEPDRISRVHRE-----------RRWSNENQK----KQNSCRNSRFM-LTVLKLFDYR 666
                ::...|..::|.:|:           ::|. |.:|    :...||...:: |:||.|:   
 Worm   500 IAMGKIPSAPMLVARKNRKSMIGKPIQGFYKKWL-ETEKPIYQEVIHCRAYIYLALSVLCLY--- 560

  Fly   667 LLKQFEFKILVASAFLFPMGFNIPFV--YSSARTTIPVE--YARMIGPIIGISNLVMRNILGILA 727
                          |:    .::|:|  |..:..|:.:|  .|..|...|||||.:...:.|.||
 Worm   561 --------------FI----LDVPYVCFYEYSIDTLKMEESEANYIYYSIGISNFISVLLFGTLA 607

  Fly   728 YKRRSWTLGLCGCGLIFGGVSVLISAFYGENLIWFQFLYGFSYAVAPAVYSTLRG-LIYVKYLGL 791
            ...|.....:....::..|::::.|...  |.:....:.|..:.|.......|:. |:.:.:..:
 Worm   608 DWTRKHITTIYASSMVGVGITIMFSTRI--NSLVELVIVGVCFGVTITSNYVLQSILVTICFEDV 670

  Fly   792 SKLTNAFGITSLAMGMGAFIGTTIAGKLIGITGNYSAAFCFAGLCLIVSGFLKLLLPLLIKCRN 855
            :....|:.:.::..|:.:.||..|...:...||.|:..|..:|:..:.|||...:....:..||
 Worm   671 NLFQVAYSLIAMIEGVASLIGPPIFALVREATGGYTVVFFISGIFALASGFFGFMFSYEMNKRN 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12866NP_001286425.1 MFS 308..>484 CDD:119392 49/184 (27%)
MFS 675..>839 CDD:119392 34/168 (20%)
gem-1NP_001379120.1 MFS 72..>254 CDD:421695 53/198 (27%)
MFS <543..727 CDD:421695 43/206 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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