DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and GBP2

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:222 Identity:55/222 - (24%)
Similarity:80/222 - (36%) Gaps:48/222 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 REPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDR------RSDYDYCGSRRHQRSS--SRRRS 59
            |..||..|    .||.....:||::...:....:||      |.|..|.|||.|...:  .||..
Yeast    20 RRRLSDDR----DRYDDYNDSSSNNGNGSRRQRRDRGSRFNDRYDQSYGGSRYHDDRNWPPRRGG 80

  Fly    60 RSRSSSESPPPEPRHRSGRS-----------SRDRERMHKSREHPQASRCIGVFGLNTNTSQHKV 113
            |.|..|.|      .|.||.           .||.||...:.:. .....|.|..|..:.:...:
Yeast    81 RGRGGSRS------FRGGRGGGRGRTLGPIVERDLERQFDATKR-NFENSIFVRNLTFDCTPEDL 138

  Fly   114 RELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRA 178
            :|||...|  |.::..|.......||...:.|.|   ..:.:|:.|  :.|| .:.:|..:..|.
Yeast   139 KELFGTVG--EVVEADIITSKGHHRGMGTVEFTK---NESVQDAIS--KFDG-ALFMDRKLMVRQ 195

  Fly   179 HTPTPGVYLGRQPRGKAPRSFSPRRGR 205
            ..|.|          :|.:.||.:..|
Yeast   196 DNPPP----------EAAKEFSKKATR 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 18/78 (23%)
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 19/83 (23%)
RRM2_HRB1_GBP2 218..292 CDD:410185
RRM3_HRB1_GBP2 347..425 CDD:410186
Blue background indicates that the domain is not in the aligned region.

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