DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and RS2Z33

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_850280.1 Gene:RS2Z33 / 818311 AraportID:AT2G37340 Length:290 Species:Arabidopsis thaliana


Alignment Length:470 Identity:92/470 - (19%)
Similarity:160/470 - (34%) Gaps:135/470 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 IPGP-----FDYPL--IGSMLLTIGKSPLELV-----THLMELMHHLPSPMRAWLGPFLLVVVDR 84
            :|||     .:.|.  |.|..||...||..|:     :...:.......|.|..| |.....:|.
plant   760 LPGPSATFSSNSPASPISSASLTSPLSPFSLISGSQGSPTKQTTSEDSGPPRPPL-PLSYTPLDS 823

  Fly    85 PEMVQDVLSSP--DCVQKPFMYDF------FRLSKGLFGAPADQWKRHRKLLNASFSPAALKSF- 140
            |   .|||..|  .|.| |:.|..      ..|...|     :.:||....|::|.:|..|:|. 
plant   824 P---SDVLPLPGEGCFQ-PWPYPLSSCWLHSELKMNL-----EPYKRESLQLSSSLTPERLRSLQ 879

  Fly   141 --VPTLNAKADQFTRELAGKVSGECFDVHKLLARYTLVTISSTTLGADLSVEKREVLE---EYTS 200
              ....:.|..|...::..||.              :|...:.:...|.|..|..|:.   ..|.
plant   880 FCSEHESEKQQQVPLQVINKVG--------------IVPPITKSHNEDESEMKPSVVRREGSRTP 930

  Fly   201 NAIQMFTNCFERIYKAWLHPDCVYRMTAAFREEEVRFKSF-------KQMSRKIITMRQALLSET 258
            |.     |......|:.|.|..| :...:..|:..|.|..       |:.|.:::..:|:..|.|
plant   931 NG-----NISRERPKSALFPSEV-KSKMSVEEQNDRMKRHQTGSVKEKRRSLQLLANQQSEHSAT 989

  Fly   259 KQTKTEYQ--------------------QDSDPEENQELPKAKIFIERLEEIAHDPANGIDEDGF 303
            |.|.| |:                    :..:|:...|.|:.:  |.||.::..:|.:       
plant   990 KSTGT-YRIVRRHRSVHEVDISDLEAVLRSQEPQHTYESPQDE--IARLRKMEVEPQS------- 1044

  Fly   304 QQHIDTMMFGGNDTSAQALSNTLLTLGMYPDWQEKVY--QEIMDVVPHGPVSYEDL----TKLTL 362
                    :..:.|....:.:.|.|       .|||.  :..:::.|.||:|.|::    .|:..
plant  1045 --------YSVDITRELPVPDKLST-------PEKVLIPERYIELEPEGPLSPEEMQEKRRKVER 1094

  Fly   363 LEMFLKET--MRLLPITGL---IARTPMKEVQAQDVTLPVGCFVLIPFLKMHRDKTIWGPDAETF 422
            ::..:.::  ..::|::..   :...|..::|.|:..:.:.|.:.                ||..
plant  1095 IKTLIAKSSLQNVIPLSDSELEVTPDPESQLQEQEKRIELSCTLA----------------AEAS 1143

  Fly   423 NPDNFLPERCAQRHP 437
            .....|...||...|
plant  1144 RRGRLLSALCATPSP 1158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 17/87 (20%)
RS2Z33NP_850280.1 RRM_SF 12..81 CDD:473069
PTZ00368 <86..144 CDD:173561
Blue background indicates that the domain is not in the aligned region.

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