DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and hnrnpab

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_012814656.1 Gene:hnrnpab / 734098 XenbaseID:XB-GENE-6042555 Length:326 Species:Xenopus tropicalis


Alignment Length:205 Identity:48/205 - (23%)
Similarity:80/205 - (39%) Gaps:36/205 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 EPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQ 135
            :..||......|.::....::.|.....:|  |||....:.|:||.|..:|.||.|::.:|.:|.
 Frog   125 QKEHRLDGRLIDPKKAMAMKKDPIKKIFVG--GLNPEAGEDKIREYFETFGEIEAIELPMDPKTN 187

  Fly   136 RSRGFCFIYF------EKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGK 194
            :.|||.||.|      :|:.:.:....|.|..|:   :|.....:.|:.:....|.:.||..||.
 Frog   188 KRRGFVFITFKEEEPVKKILEKKFHNVSGSKCEI---KIAQPKEVYQQQYGGRGGSFGGRGGRGG 249

  Fly   195 APRSFSPRRGRRVY-----------------------HDRSASPYDNYRDRYDYRNDRYDRNLRR 236
            ..:..:..:|...|                       :|.|...|..|...|||  .:...|..:
 Frog   250 KAQGQNWNQGYNSYWNQGYGNQGYGGYGQQGYGGYGNYDYSGYGYYGYGPGYDY--SQGSANYGK 312

  Fly   237 SPSRNRYTRN 246
            :|.|..:..|
 Frog   313 APRRGSHQSN 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 25/84 (30%)
hnrnpabXP_012814656.1 CBFNT 1..52 CDD:311868
RRM1_hnRNPAB 61..140 CDD:410151 3/14 (21%)
RRM2_hnRNPAB 145..224 CDD:409997 25/83 (30%)
Blue background indicates that the domain is not in the aligned region.

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