DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and Alyref

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001381323.1 Gene:Alyref / 690585 RGDID:1594679 Length:256 Species:Rattus norvegicus


Alignment Length:249 Identity:54/249 - (21%)
Similarity:90/249 - (36%) Gaps:46/249 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRRRSRSRSSSESPPPEPRHRSGRSSRD 82
            |..||......|....|....:      |.|.....::.|.:|......:.|...|..:|...|:
  Rat    14 KLNRSQRGGRGGGRGRGRAGSQ------GGRGGAVQAAARVNRGGGPMRNRPAIARGAAGGGGRN 72

  Fly    83 R-------ERMHKSREHPQASRCIG------------VFGLNTNTSQHKVRELFNKYGPIERIQM 128
            |       :::....:|.......|            |..|:...|...::|||.::|.:::..:
  Rat    73 RPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAV 137

  Fly   129 VIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHT---PTPGVYLGRQ 190
            ..| ::.||.|...::||:.:||..|....:|:.:|||.:.:.. :|.:..|   |...:..|..
  Rat   138 HYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL-VTSQIDTQRRPAQSINRGGM 200

  Fly   191 PRGKAPRSF---SPRR-------------GRRVYHDRSASPYDNYRDRYDYRND 228
            .|.:...||   ..||             ||......||...|...|.|:.|.|
  Rat   201 TRNRGSGSFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEELDAQLDAYNARMD 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 21/90 (23%)
AlyrefNP_001381323.1 RRM_THOC4 107..180 CDD:410081 20/73 (27%)

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