DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and hnrnpd

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001103930.1 Gene:hnrnpd / 560522 ZFINID:ZDB-GENE-070424-97 Length:314 Species:Danio rerio


Alignment Length:203 Identity:48/203 - (23%)
Similarity:85/203 - (41%) Gaps:43/203 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ERMHKSREH--------PQASRC---------IGVFGLNTNTSQHKVRELFNKYGPIERIQMVID 131
            |::...:||        |:.::.         |.|.||:.:|.:.|:||.|:.||.:|.|::.::
Zfish   109 EKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPME 173

  Fly   132 AQTQRSRGFCFIYFEKLSDARAAKDSC-SGIEVDGRRIRVDFS---ITQRAHTPTPGVYLGR-QP 191
            .:|.:.||||||.|::....:...:.. ..|.:....::|..|   ..|:......|.|..| :.
Zfish   174 NKTNKRRGFCFITFKEEEPVKKIMEKMYHNIGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRG 238

  Fly   192 RGKAPRSFSP-------------------RRGRRVYHDRSASPYDNYRDRYDYRNDR--YDRNLR 235
            ||...::::.                   .:|...|.....|.|:||....||.|.:  |.::.|
Zfish   239 RGGPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGGYGGYDYSGYNNYYGYGDYSNQQSGYGKSQR 303

  Fly   236 RSPSRNRY 243
            |...:|.|
Zfish   304 RGGHQNSY 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 24/91 (26%)
hnrnpdNP_001103930.1 CBFNT 3..54 CDD:311868
RRM_SF 50..129 CDD:473069 4/19 (21%)
RRM2_hnRNPD 140..214 CDD:241027 22/73 (30%)
Blue background indicates that the domain is not in the aligned region.

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