DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tra2 and hnrnpd

DIOPT Version :9

Sequence 1:	NP_476764.1	Gene:	tra2 / 36619	FlyBaseID:	FBgn0003742	Length:	264	Species:	Drosophila melanogaster
Sequence 2:	NP_001103930.1	Gene:	hnrnpd / 560522	ZFINID:	ZDB-GENE-070424-97	Length:	314	Species:	Danio rerio

Alignment Length:	203	Identity:	48/203 - (23%)
Similarity:	85/203 - (41%)	Gaps:	43/203 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly    84 ERMHKSREH--------PQASRC---------IGVFGLNTNTSQHKVRELFNKYGPIERIQMVID 131
            |::...:||        |:.::.         |.|.||:.:|.:.|:||.|:.||.:|.|::.::
Zfish   109 EKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPME 173

  Fly   132 AQTQRSRGFCFIYFEKLSDARAAKDSC-SGIEVDGRRIRVDFS---ITQRAHTPTPGVYLGR-QP 191
            .:|.:.||||||.|::....:...:.. ..|.:....::|..|   ..|:......|.|..| :.
Zfish   174 NKTNKRRGFCFITFKEEEPVKKIMEKMYHNIGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRG 238

  Fly   192 RGKAPRSFSP-------------------RRGRRVYHDRSASPYDNYRDRYDYRNDR--YDRNLR 235
            ||...::::.                   .:|...|.....|.|:||....||.|.:  |.::.|
Zfish   239 RGGPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGGYGGYDYSGYNNYYGYGDYSNQQSGYGKSQR 303

  Fly   236 RSPSRNRY 243
            |...:|.|
Zfish   304 RGGHQNSY 311

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM	<74..242	CDD:223796	46/200 (23%)
tra2	NP_476764.1	RRM_TRA2	98..175	CDD:240809	24/89 (27%)
hnrnpd	NP_001103930.1	CBFNT	3..54	CDD:285369
		RRM1_hnRNPD_like	56..129	CDD:241019	4/19 (21%)
		RRM2_hnRNPD	140..214	CDD:241027	22/73 (30%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910