DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and RBM23

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001339693.1 Gene:RBM23 / 55147 HGNCID:20155 Length:483 Species:Homo sapiens


Alignment Length:317 Identity:64/317 - (20%)
Similarity:97/317 - (30%) Gaps:164/317 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 YKHKRSASSSSAGTTSSG-------HKDRRSDYDYCGSRRHQRSSSRRRSRSR---------SSS 65
            |....::|:|::|..:||       .|.:|       ||.|.:|..|:|||||         |.|
Human    78 YPSNTTSSTSNSGNETSGSSTIGETSKKKR-------SRSHNKSRDRKRSRSRDRDRYRRRNSRS 135

  Fly    66 ESPPPEPRHRS-------GRSSRDRERMHKSREH------------------------------- 92
            .||..:.||||       |..||.|:...:.|.|                               
Human   136 RSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVD 200

  Fly    93 ---PQ------------ASR--------------------------------------------- 97
               |:            |:|                                             
Human   201 NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 265

  Fly    98 -CIGVFG-----------------------------------------LNTNTSQHKVRELFNKY 120
             .||:.|                                         |:.|.::..:|.:|..:
Human   266 LAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 330

  Fly   121 GPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQR 177
            |.|:.|.::.|:.|.||:|:.||.|.....||.|.:..:|.|:.||.:||. .:|:|
Human   331 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG-HVTER 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 28/165 (17%)
RBM23NP_001339693.1 SF-CC1 143..482 CDD:273721 42/245 (17%)

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