DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and Pabpn1

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_062275.1 Gene:Pabpn1 / 54196 MGIID:1859158 Length:302 Species:Mus musculus


Alignment Length:176 Identity:42/176 - (23%)
Similarity:71/176 - (40%) Gaps:45/176 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVID 131
            ||||      |.:......:.:..|  ..:|.|.|..::...:..::...|:..|.:.|:.::.|
Mouse   146 SPPP------GNAGPVIMSLEEKME--ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD 202

  Fly   132 AQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVD-----GRRIRVDFSITQRAHTPTPGV------ 185
            ..:...:||.:|.|   ||..:.:.|   :.:|     ||:|:|   |.:|  |..||:      
Mouse   203 KFSGHPKGFAYIEF---SDKESVRTS---LALDESLFRGRQIKV---IPKR--TNRPGISTTDRG 256

  Fly   186 -----YLGRQPRGKAPRS-----FSPRRGRRVYHDRSA-----SPY 216
                 |..|.....:.||     |:.|...|:|..|:.     |||
Mouse   257 FPRSRYRARTTNYNSSRSRFYSGFNSRPRGRIYRGRARATSWYSPY 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 19/83 (23%)
Pabpn1NP_062275.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..111
Interaction with SKIP. /evidence=ECO:0000250 2..141
Stimulates PAPOLA. /evidence=ECO:0000250 115..143
RRM_II_PABPN1 169..244 CDD:409966 19/83 (23%)
Strong poly(A) affinity and self-association. /evidence=ECO:0000250 255..302 10/46 (22%)
Interaction with PAPOLA. /evidence=ECO:0000250 282..302 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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