DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and RBM11

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001307531.1 Gene:RBM11 / 54033 HGNCID:9897 Length:288 Species:Homo sapiens


Alignment Length:445 Identity:74/445 - (16%)
Similarity:128/445 - (28%) Gaps:160/445 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 VQDVLSSPDCVQKPFMYDFFRLSKGL---FGAPADQWKRHRKLLNASFSPAALKSFVPTLNAKAD 149
            ::|.....|.|...|..:...|:.||   ..|.:|:.:.:..:.:|.....:|.|.:...:...|
Human   359 LEDTEDGVDLVSSRFSANTHSLASGLSTNSQAGSDRKRSYLNVPDADSDTTSLNSMMSVYSETGD 423

  Fly   150 QFTRELAGKVSGECFDVHKLLARYTLVTISSTTLGADLSVEKREVLEEYTSNAIQMFTNCFERIY 214
            ....::.|::.......:|....|..|.........|   ||::..:.|.               
Human   424 YGNVKVTGEILLHISYCYKTGGLYIFVKSCRNLATGD---EKKQRTDAYV--------------- 470

  Fly   215 KAWLHPDCVYRMTAAFREEEVRFKSFKQMSRKIITMRQALLSETKQTKTEYQQDSDPEENQELPK 279
            |::|.||                                 .|...:.||:.:..::||.|:.| |
Human   471 KSYLLPD---------------------------------KSRNNKRKTKIRTGTNPEFNETL-K 501

  Fly   280 AKIFIERLE-----------------------EIAHDPANGIDEDGFQQHIDTMMF------GGN 315
            ..|...:||                       |||.|..|      |:...|....      ...
Human   502 YTISHTQLETRTLQLSVWHYDRFGRNSFLGEVEIAFDSWN------FENPCDEWFVLQPKVELAP 560

  Fly   316 DTSAQALSNTLLTLGMYPDWQEKVY----QEIMDVVPHGPVSYEDLTKLTLLEMFLKETMRLLPI 376
            |.|.|......:.|...|..:..::    ::...:...|...........:||:|:|:...|..:
Human   561 DISLQYKGELTIVLRYIPPEENLIFPAGQRQEKKIFKRGKKKESSSISGGILEVFIKKAKNLTAV 625

  Fly   377 -------------------------TGLIARTPMKE---------VQAQDVTLPVGCFVLIPFLK 407
                                     |.::.::...|         :..||:  ...|..|     
Human   626 KSGGTSDSFVKGYLLPDDNKATKHKTAVVKKSVNPEWNHTFIFSGLYPQDI--KNACLEL----- 683

  Fly   408 MHRDKTIWGPDAETFNPDNFLPERCAQRHPYAFIPFSQGPRNCIGMKYG----WL 458
                 |||  |.|.|:.:.||          ..:..:.|.    ||.||    |:
Human   684 -----TIW--DKEAFSSNVFL----------GGVRLNSGS----GMSYGKTVDWM 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 15/81 (19%)
RBM11NP_001307531.1 RRM_RBM11 9..83 CDD:410006
PABP-1234 <12..223 CDD:130689
Blue background indicates that the domain is not in the aligned region.

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