DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and Hnrnpdl

DIOPT Version :9

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_057899.2 Gene:Hnrnpdl / 50926 MGIID:1355299 Length:420 Species:Mus musculus


Alignment Length:183 Identity:46/183 - (25%)
Similarity:71/183 - (38%) Gaps:55/183 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 RERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYF-- 145
            |.:..|.:|.|:.   :.|.||:.:||:.:::|.|..:|.||.|::.:|.:|...||||||.:  
Mouse   222 RAKALKGKEPPKK---VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 283

  Fly   146 ----EKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQP-----RGKAPRSFSP 201
                :||.::|..:......|:         .:.|...     ||..:|.     ||.|......
Mouse   284 EEPVKKLLESRYHQIGSGKCEI---------KVAQPKE-----VYRQQQQQQKGGRGAAAGGRGG 334

  Fly   202 RRGR------------RVYHDRSASPYDNYRDR------------YDYRNDRY 230
            .|||            ..|:|:.   |.||...            |||....|
Mouse   335 ARGRGRGQGQNWNQGFNNYYDQG---YGNYNSAYGGDQNYSGYGGYDYTGYNY 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM <74..242 CDD:223796 46/183 (25%)
RRM_TRA2 98..175 CDD:240809 23/82 (28%)
HnrnpdlNP_057899.2 RRM1_hnRPDL 149..224 CDD:241202 1/1 (100%)
RRM2_hnRPDL 234..308 CDD:241029 23/85 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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