Protein Alignment tra2 and msi1

DIOPT Version :10

• Sequence 1: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Sequence 2: XP_012816886.1
• Gene: msi1 / 496961
• XenbaseID: XB-GENE-490596
• Length: 347
• Species: Xenopus tropicalis
• Alignment Length: 247
• Identity: 49/247 - (19%)
• Similarity: 85/247 - (34%)
• Gaps: 64/247 - (25%)

  Fly    30 TTSSGHKDRRSDYDYCGSRRHQRSSSRRRSR--------SRSSSESPPPEPRHRSGRSSRDRERM 86
            ||..|.::..|.:.........|....:|||        .::..:....:.||.....:.|.:..
 Frog    31 TTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 95

  Fly    87 HKSREHPQ---ASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYF--- 145
            ...|..|:   .::.|.|.||:.||:...|::.|.::|.::...::.|..|.|.|||.|:.|
 Frog    96 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGE 160

  Fly   146 ---EKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGV---------------------- 185
               ||:.|....       |::.:.:....:..:...:||..|
 Frog   161 DIVEKVCDIHFH-------EINNKMVECKKAQPKEVMSPTGSVRGRSRVMPYGMDAFMLGIGMLG 218

  Fly   186 YLGRQPRGKAPRSF------------------SPRRGRRVYHDRSASPYDNY 219
            |.|.|....|.||:                  :|..|..|..:.:|.|...|
 Frog   219 YPGFQAATYASRSYTGIAPGYTYQFPEFRVERTPLPGAPVLPELTAIPLTAY 270

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	21/84 (25%)
msi1	XP_012816886.1	RRM1_MSI1	20..96	CDD:241203	11/64 (17%)
		PABP-1234	<32..324	CDD:130689	48/246 (20%)
		RRM2_MSI	110..183	CDD:240769	21/79 (27%)