DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and srsf10

DIOPT Version :9

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001011096.1 Gene:srsf10 / 496509 XenbaseID:XB-GENE-492982 Length:258 Species:Xenopus tropicalis


Alignment Length:160 Identity:50/160 - (31%)
Similarity:76/160 - (47%) Gaps:36/160 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 VRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIE---VDGRRIRVDFSI 174
            :|..|.:||||..:.:.:|..|:|.|||.::.||   |.|.|:|:...::   :.||:|.:.|:.
 Frog    26 LRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFE---DVRDAEDALHNLDKKWICGRQIEIQFAQ 87

  Fly   175 TQRAHTPTPGVYLGRQPRGKAPRSFSPRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPS 239
            ..|                |.|.....:.||..|   .:|.||:.|.....|:..|:|  |||.|
 Frog    88 GDR----------------KTPNQMKAKEGRSTY---GSSRYDDDRHNRRSRSRSYER--RRSRS 131

  Fly   240 RNRYTRNRSYSRSRSP------QLRRTSSR 263
            |: :.:|  |.||.||      :|.|:.||
 Frog   132 RS-FEQN--YGRSYSPRGRGGERLHRSRSR 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM <74..242 CDD:223796 40/131 (31%)
RRM_TRA2 98..175 CDD:240809 22/64 (34%)
srsf10NP_001011096.1 RRM_SF 10..93 CDD:388407 24/85 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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