DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment tra2 and hnrnpa1b

DIOPT Version :9

Sequence 1:	NP_476764.1	Gene:	tra2 / 36619	FlyBaseID:	FBgn0003742	Length:	264	Species:	Drosophila melanogaster
Sequence 2:	NP_956398.1	Gene:	hnrnpa1b / 378453	ZFINID:	ZDB-GENE-030912-14	Length:	422	Species:	Danio rerio

Alignment Length:	148	Identity:	35/148 - (23%)
Similarity:	64/148 - (43%)	Gaps:	28/148 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 SRRHQRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQH 111
            |.|.....:|.....|.|.|..|.||           |::.|          :.:.||:..|:..
Zfish     4 SHRQACGVARTEIVGRMSKEGQPREP-----------EQLRK----------LFIGGLSFETTDD 47

  Fly   112 KVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQ 176
            .:|..|.::|.:....::.|..|:|||||.|:.:..:.:..|:.|: ...:||||.:....::::
Zfish    48 SLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA-RPHKVDGRLVEPKRAVSR 111

  Fly   177 R------AHTPTPGVYLG 188
            .      |||....:::|
Zfish   112 EDSSKPFAHTTVKKIFVG 129

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM	<74..242	CDD:223796	26/121 (21%)
tra2	NP_476764.1	RRM_TRA2	98..175	CDD:240809	20/76 (26%)
hnrnpa1b	NP_956398.1	RRM	<19..187	CDD:223796	32/133 (24%)
		RRM_SF	31..111	CDD:302621	21/90 (23%)
		RRM2_hnRNPA1	124..200	CDD:241024	1/6 (17%)
		HnRNPA1	367..>387	CDD:288479
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910