DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and eif4bb

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_005166071.1 Gene:eif4bb / 336619 ZFINID:ZDB-GENE-030131-8563 Length:632 Species:Danio rerio


Alignment Length:238 Identity:58/238 - (24%)
Similarity:93/238 - (39%) Gaps:53/238 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 PPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQ 133
            |..|| .:...:.||.|:.:|   |..:..:|  .|..:.|:..:|:.|.... |..:::..:..
Zfish    74 PTAPR-AAREPNVDRSRLPRS---PPYTAFLG--NLPYDVSEESIRDFFRGLA-ISAVRLPREPN 131

  Fly   134 T-QRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGR---QPRGK 194
            . :|.:||.:..|:.:.....|. |.:...:..||||||.:..........|:..||   :.||:
Zfish   132 NPERLKGFGYAEFDDIESLLRAL-SLNEENLGNRRIRVDIADQSNDKERDSGMMSGRDRDRDRGR 195

  Fly   195 ------------------APRSFSPRRGRRVYHDRSASPYD--------------NYRDRYDYRN 227
                              :.:...||:... |.|:|...|:              :.|||||.|:
Zfish   196 GMDSGPDKTDSDWRARPSSDQDDGPRKDDG-YGDKSRDRYESDRFRDGPRRDDRFSGRDRYDDRD 259

  Fly   228 --DRYDRNLRRSPSRNRYTRNRSYSR----SRSPQLRRTSSRY 264
              ||||...||....:|  .:|.|.|    ||....|..||.:
Zfish   260 RKDRYDDRDRRDRFDDR--GSRDYDRGGFDSRGGGRRGFSSGF 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 18/79 (23%)
eif4bbXP_005166071.1 RRM_eIF4B 94..175 CDD:409836 19/84 (23%)
PTZ00459 <429..532 CDD:185638
Blue background indicates that the domain is not in the aligned region.

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