DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and rbm7

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_956219.1 Gene:rbm7 / 334784 ZFINID:ZDB-GENE-030131-6724 Length:252 Species:Danio rerio


Alignment Length:254 Identity:54/254 - (21%)
Similarity:86/254 - (33%) Gaps:101/254 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 QASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSC 158
            :|.|.:.|..|:...::..:.|||.:.||:.::::..:.: .:|:.|.|:.|:.......|.:..
Zfish     6 EADRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNE-GKSKLFAFVNFKHEVSVPYALNLL 69

  Fly   159 SGIEVDGRRIRVDFS-----ITQRAHTP----------TPGVYLGR------------------- 189
            :||.:.||::.:.|.     |.|...:|          |||...||                   
Zfish    70 NGIRLHGRQLNIKFKTGSSHINQEGKSPANSQNPSPANTPGHRGGRTPEQMGSPSYSPPQHMQRP 134

  Fly   190 ------------------------------------QPRGKAPRSFSPRRGRRVYHDRSASPYDN 218
                                                ||||.|...:|..||:|  |    ||.||
Zfish   135 FSSPDTLQRQAMMNNMWQVQMQQLQMLSGTFQQGMQQPRGNADGGWSGHRGQR--H----SPQDN 193

  Fly   219 YRDRYDYRNDRYDRNLRRSPSRNRYTRNR----------------SYSRSRSPQLRRTS 261
                    |:...|:.|.....|.|.|||                .::|:..|..||.|
Zfish   194 --------NNHQGRDQRHGNGANNYERNRRDGQRGDFYHHDDRSGGHNRNYPPDRRRDS 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 18/83 (22%)
rbm7NP_956219.1 RRM_RBM7 8..82 CDD:410005 17/74 (23%)
PABP-1234 <11..195 CDD:130689 39/198 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..137 8/48 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..252 27/88 (31%)
PRK12678 <171..>248 CDD:237171 27/88 (31%)

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