DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and rbm38

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001103597.1 Gene:rbm38 / 333991 ZFINID:ZDB-GENE-030131-5923 Length:234 Species:Danio rerio


Alignment Length:123 Identity:35/123 - (28%)
Similarity:56/123 - (45%) Gaps:24/123 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKL 148
            |.|:.|.:.......|.|.||..:|:...:|:.|..:|.|:...::.|.||.:|||:.|:   .:
Zfish    12 ETMYPSIQKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFV---TM 73

  Fly   149 SDARAAKDSCSGIE--VDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFSPRRG 204
            .|..||:.:|....  :|||:..|:.:            |||.:||       ||..|
Zfish    74 MDKSAAERACKDPNPIIDGRKANVNLA------------YLGAKPR-------SPLTG 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 24/80 (30%)
rbm38NP_001103597.1 RRM_RBM24_RBM38_like 25..100 CDD:409818 24/77 (31%)
PABP-1234 <37..215 CDD:130689 27/98 (28%)

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