DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and srsf2b

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_955945.2 Gene:srsf2b / 323700 ZFINID:ZDB-GENE-030131-2420 Length:220 Species:Danio rerio


Alignment Length:214 Identity:69/214 - (32%)
Similarity:90/214 - (42%) Gaps:64/214 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 PPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDA 132
            |||:.   .|.:|                  :.|..|...||...:|.:|.|||.:..:.:..|.
Zfish     6 PPPDV---DGMTS------------------LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDR 49

  Fly   133 QTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGK--- 194
            .|:.||||.|:.|....||..|.|:..|..:|||.:||..:   |...| |..|.|....|:   
Zfish    50 YTKESRGFAFVRFHDKRDAEDAMDAMDGAILDGRELRVQMA---RYGRP-PDSYYGGGGGGRRGS 110

  Fly   195 ----------APRSFSPRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRY--TRNR 247
                      |.||.||||.||   .||.|                 |:..||.||:||  :|:|
Zfish   111 GGGGGSRRHGARRSRSPRRRRR---SRSRS-----------------RSRSRSRSRSRYSRSRSR 155

  Fly   248 SYSRSRS----PQLRRTSS 262
            |||||||    |..|::.|
Zfish   156 SYSRSRSKSHTPNKRKSKS 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 27/78 (35%)
srsf2bNP_955945.2 RRM_SRSF2_SRSF8 16..88 CDD:409751 26/71 (37%)

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