DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and tia1l

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:95 Identity:29/95 - (30%)
Similarity:46/95 - (48%) Gaps:3/95 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SREHPQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDA 151
            |.:....|....||  .|:...|...||..|..:|.|...::|.|..|.:|:|:.||.|....||
Zfish    87 SSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDA 151

  Fly   152 RAAKDSCSGIEVDGRRIRVDFSITQRAHTP 181
            .:|....:|..:.||:||.::: |::...|
Zfish   152 ESAIQQMNGQWLGGRQIRTNWA-TRKPSAP 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 26/80 (33%)
tia1lNP_956476.1 RRM_SF 10..83 CDD:473069
RRM2_TIA1_like 98..172 CDD:409789 25/73 (34%)
RRM3_TIAR 206..278 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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