DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and HNRNPAB

DIOPT Version :9

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_112556.2 Gene:HNRNPAB / 3182 HGNCID:5034 Length:332 Species:Homo sapiens


Alignment Length:218 Identity:50/218 - (22%)
Similarity:86/218 - (39%) Gaps:41/218 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 RSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIE 124
            :..:|.|....:..||......|.::....::.|.....:|  |||...::.|:||.|.::|.||
Human   119 KDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG--GLNPEATEEKIREYFGEFGEIE 181

  Fly   125 RIQMVIDAQTQRSRGFCFIYF------EKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTP 183
            .|::.:|.:..:.|||.||.|      :|:.:.:....|.|..|:   ::.....:.|:....:.
Human   182 AIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI---KVAQPKEVYQQQQYGSG 243

  Fly   184 GVYLGRQPRGK---------APRSFSPRRGRRVY-----------------HDRSASPYDNYRDR 222
            |  .|.:.||.         ..:|.|..:|...|                 :|.|...|..|...
Human   244 G--RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPG 306

  Fly   223 YDYR--NDRYDRNLRRSPSRNRY 243
            |||.  :..|.::.||...:|.|
Human   307 YDYSQGSTNYGKSQRRGGHQNNY 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM <74..242 CDD:223796 46/201 (23%)
RRM_TRA2 98..175 CDD:240809 23/82 (28%)
HNRNPABNP_112556.2 CBFNT 1..70 CDD:311868
RRM1_hnRNPAB 66..145 CDD:410151 5/25 (20%)
RRM2_hnRNPAB 150..229 CDD:409997 24/83 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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