DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and Rbmxl1

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_033059.2 Gene:Rbmxl1 / 19656 MGIID:1343045 Length:388 Species:Mus musculus


Alignment Length:161 Identity:52/161 - (32%)
Similarity:74/161 - (45%) Gaps:13/161 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 GLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRR 167
            ||||.|::..:..:|.|||.|..|.::.|.:|.:||||.|:.||..:||:.|....:|..:||:.
Mouse    14 GLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78

  Fly   168 IRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFSPRRGRRVYHDRSASPYDNYRDRYDYRND-RYD 231
            |:|:       ....|....||:.....|||..|.||.|.....:..|    ..|..|.:| .|.
Mouse    79 IKVE-------QATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGP----PSRGGYMDDGGYS 132

  Fly   232 RNLRRSPSRNRYTRNRS-YSRSRSPQLRRTS 261
            .|...|.||......|. ..||..|..:|::
Mouse   133 MNFNMSSSRGPLPVKRGPPPRSGGPPPKRST 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 28/71 (39%)
Rbmxl1NP_033059.2 RRM_RBMX_like 7..86 CDD:409816 28/78 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..388 32/116 (28%)
RBM1CTR 170..214 CDD:400429
Blue background indicates that the domain is not in the aligned region.

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