DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tra2 and Rbm3

DIOPT Version :9

Sequence 1:	NP_476764.1	Gene:	tra2 / 36619	FlyBaseID:	FBgn0003742	Length:	264	Species:	Drosophila melanogaster
Sequence 2:	NP_001159881.1	Gene:	Rbm3 / 19652	MGIID:	1099460	Length:	154	Species:	Mus musculus

Alignment Length:	145	Identity:	53/145 - (36%)
Similarity:	70/145 - (48%)	Gaps:	22/145 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly   101 VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDG 165
            |.|||.||.:..:.:.|:.:|||..:.:|.|.:|||||||.||.|.....|..|..:.:|..:||
Mouse    10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDG 74

  Fly   166 RRIRVDFSITQRAHTPTPGVYLGR---QPRGKAPRSFSPRR------------GR-RVYHDRSAS 214
            |:||||.: .:.|.....|.:.||   ..||...:.:...|            || |.|..||..
Mouse    75 RQIRVDHA-GKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGRSQG 138

  Fly   215 PYD-----NYRDRYD 224
            .||     ||||.||
Mouse   139 GYDRYSGGNYRDNYD 153

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM	<74..242	CDD:223796	53/145 (37%)
tra2	NP_476764.1	RRM_TRA2	98..175	CDD:240809	32/73 (44%)
Rbm3	NP_001159881.1	RRM_CIRBP_RBM3	6..85	CDD:240895	32/75 (43%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48034
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.010