Protein Alignment tra2 and rsp-3

DIOPT Version :10

• Sequence 1: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Sequence 2: NP_001370111.1
• Gene: rsp-3 / 176688
• WormBaseID: WBGene00004700
• Length: 258
• Species: Caenorhabditis elegans
• Alignment Length: 220
• Identity: 60/220 - (27%)
• Similarity: 84/220 - (38%)
• Gaps: 61/220 - (27%)

  Fly   101 VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDG 165
            |..|..:..:.:|.::|:|||.|:    .:|.::.|...|.|:.||...||..|..:..|.|.||
 Worm    13 VGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDG 73

  Fly   166 RRIRVDFS--ITQRAHTPTP----GVYLGRQPRG--KAPRSFSPRR--GRRVYHDRSASPYDNYR 220
            |||||:|:  :..|.....|    |.:.|...||  ...|...|:|  |.||..: ...|..:::
 Worm    74 RRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE-GLPPTGSWQ 137

  Fly   221 DRYDYRND--------------------RY-----------DRNLRRSPSRNRYTR--------- 245
            |..|:..|                    ||           |...|.......|.|
 Worm   138 DLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVREDNSSGG 202

  Fly   246 -----NRSYSRSRSPQL-RRTSSRY 264
                 .|..||||||:. ||.|.:|
 Worm   203 GSGGGGRDRSRSRSPRAERRASPKY 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	27/75 (36%)
rsp-3	NP_001370111.1	RRM1_SRSF1_like	10..80	CDD:409775	26/70 (37%)
		RRM2_SRSF1_like	123..196	CDD:410013	12/73 (16%)