DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and tiar-2

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_496718.1 Gene:tiar-2 / 174909 WormBaseID:WBGene00012904 Length:434 Species:Caenorhabditis elegans


Alignment Length:162 Identity:42/162 - (25%)
Similarity:70/162 - (43%) Gaps:35/162 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 SGRSSRDRERMH-----------KSREHPQASRCIGVF--GLNTNTSQHKVRELFNKYGPIERIQ 127
            :||...::| ||           ::|..|:.||...||  .|.:.....|:||.|.|:|.:...:
 Worm    99 NGRELLEKE-MHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAK 162

  Fly   128 MVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQP- 191
            ::.|..|.:.:|:.|:.:.:..||..|.|..:|..:..|.||.:::.              |:| 
 Worm   163 IIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWAT--------------RKPD 213

  Fly   192 ----RG--KAPRSFSPRRGRRVYHDRSASPYD 217
                ||  :..|......||..||::|...||
 Worm   214 EDGERGGDRGDRRGGGGGGRDRYHNQSEKTYD 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 23/80 (29%)
tiar-2NP_496718.1 PABP-1234 41..>317 CDD:130689 42/162 (26%)
RRM_SF 133..207 CDD:473069 21/73 (29%)
RRM3_TIA1_like 256..325 CDD:409790
Blue background indicates that the domain is not in the aligned region.

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