DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tra2 and Ref1

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_309011.4 Gene:Ref1 / 1270326 VectorBaseID:AGAMI1_001459 Length:271 Species:Anopheles gambiae


Alignment Length:227 Identity:54/227 - (23%)
Similarity:85/227 - (37%) Gaps:54/227 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRR-----------RSRSR 62
            ||...:.|...:..|.|   |..|.|           |:|...||..:|           :.|:|
Mosquito    26 GRAGGAGRSNRRPGAGS---GGASGG-----------GARNGFRSGGQRNGGASGGGGVLKGRTR 76

  Fly    63 SSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFG-----------------LNTNTSQ 110
            ...      .|.|.||...:....|...|.|:.:|.:...|                 |:...|:
Mosquito    77 GGI------TRARYGRGDVNSAWKHDMYEGPRKNRLLAAAGGLGAGGPGGAAKLLVSNLDFGVSE 135

  Fly   111 HKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSIT 175
            ..:.|||.::||:....:..| ::.||.|...:.||:.|||..|....:|:.:|||.:.:..:.:
Mosquito   136 TDINELFAEFGPLRSASVHYD-RSGRSLGTADVVFERRSDAIKAMKQYNGVPLDGRPMSIQMATS 199

  Fly   176 Q--RAHTPTPGVYLGRQPRGKAPRSFSPRRGR 205
            :  ....|.|.| |......::||  .|..||
Mosquito   200 EIPAPRVPRPAV-LAASASARSPR--KPAGGR 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 23/95 (24%)
Ref1XP_309011.4 None

Return to query results.
Submit another query.