Protein Alignment tra2 and Pabpn1

DIOPT Version :10

• Sequence 1: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Sequence 2: XP_063129984.1
• Gene: Pabpn1 / 116697
• RGDID: 619928
• Length: 320
• Species: Rattus norvegicus
• Alignment Length: 196
• Identity: 47/196 - (23%)
• Similarity: 76/196 - (38%)
• Gaps: 37/196 - (18%)

  Fly    67 SPPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVID 131
            ||||      |.:......:.:..|  ..:|.|.|..::...:..::...|:..|.:.|:.::.|
  Rat   146 SPPP------GNAGPVIMSLEEKME--ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD 202

  Fly   132 AQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVD-----GRRIRVD-----FSITQRAHTPTPGVY 186
            ..:...:||.:|.|   ||..:.:.|   :.:|     ||:|:|.     .||..|..:.||.:.
  Rat   203 KFSGHPKGFAYIEF---SDKESVRTS---LALDESLFRGRQIKVSLGPWLLSILYRFSSLTPRLS 261

  Fly   187 LGRQPRGKAPRSFSPRRGRRVYHDRSASPYDN--YRDRYDYRNDRYDRNLRRSPSR-NRYTRNRS 248
            :      ..|....|:|..|    ...|..|.  .|.||..|...|:.:..|..|. |...|.|.
  Rat   262 V------LCPFQVIPKRTNR----PGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRI 316

  Fly   249 Y 249
            |
  Rat   317 Y 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	20/88 (23%)
Pabpn1	XP_063129984.1	None