DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and hnrnpa3

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_031748359.1 Gene:hnrnpa3 / 100144993 XenbaseID:XB-GENE-5878765 Length:385 Species:Xenopus tropicalis


Alignment Length:137 Identity:41/137 - (29%)
Similarity:71/137 - (51%) Gaps:11/137 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 SRSRSSSESPPPEPRHRSG--RSSRD------RERMHKSREHPQASRCIGVFGLNTNTSQHKVRE 115
            |.|||:.|:..|..|.|..  |.:.|      .::.|:.:| |:..|.:.:.||:..|:...:||
 Frog    48 SSSRSAGEAAAPFGRERCAMPRGAMDDHWPSTDDQGHEPKE-PEQLRKLFIGGLSFETTDDSLRE 111

  Fly   116 LFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHT 180
            .|.::|.:....::.|.||:|||||.|:.:..:.:..||. |....:||||.:....::: |..:
 Frog   112 HFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-SARPHKVDGRVVEPKRAVS-REDS 174

  Fly   181 PTPGVYL 187
            ..||.:|
 Frog   175 ARPGAHL 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 24/78 (31%)
hnrnpa3XP_031748359.1 RRM1_hnRNPA_like 94..171 CDD:409992 23/78 (29%)
RRM2_hnRNPA3 184..263 CDD:409996
HnRNPA1 328..>344 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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