DRSC/TRiP Functional Genomics Resources

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Protein Alignment tra2 and msi2

DIOPT Version :10

Sequence 1:NP_476764.1 Gene:tra2 / 36619 FlyBaseID:FBgn0003742 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_004911774.1 Gene:msi2 / 100038158 XenbaseID:XB-GENE-488852 Length:407 Species:Xenopus tropicalis


Alignment Length:106 Identity:29/106 - (27%)
Similarity:48/106 - (45%) Gaps:11/106 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 RSSSRRRSR--------SRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQ---ASRCIGVFGLN 105
            |..:.:|||        ..:|.:....:|.|.....:.|.:.....|..|:   .::.|.|.||:
 Frog    54 RDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLS 118

  Fly   106 TNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFE 146
            .||....|::.|.::|.:|...::.|..|.|.|||.|:.||
 Frog   119 ANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tra2NP_476764.1 RRM_TRA2 96..175 CDD:409798 19/51 (37%)
msi2XP_004911774.1 RRM1_MSI2 17..109 CDD:410153 10/54 (19%)
RRM2_MSI 111..184 CDD:240769 19/49 (39%)

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