Sequence 1: | NP_523743.1 | Gene: | RpI1 / 36617 | FlyBaseID: | FBgn0019938 | Length: | 1642 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_010141.1 | Gene: | RPO21 / 851415 | SGDID: | S000002299 | Length: | 1733 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1721 | Identity: | 487/1721 - (28%) |
---|---|---|---|
Similarity: | 776/1721 - (45%) | Gaps: | 389/1721 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 DLEFAVFTDQEIRKLSVVKVITGITFD-ALGHAIPGGLYDIRMGSYGRCMDPCGTCLK-LQDCPG 77
Fly 78 HMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQELELF 142
Fly 143 KSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAITHSALQRLGKKC 207
Fly 208 RHCNKSMRFVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVIFADECRRYLRQIYANYPELLKL 272
Fly 273 LVPVLGLSNTDLTQGDRSPV----DLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENN 333
Fly 334 HVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETA-HEKLYTAWLALQMSVDVLLDVNMSRE----M 393
Fly 394 KSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVT 455
Fly 456 EWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVL 520
Fly 521 NGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEA 585
Fly 586 YNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF-----QGLSQLKKDI 645
Fly 646 KLLP-PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGT---N 706
Fly 707 PEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQL 771
Fly 772 EGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEK----MEAAYVKD 832
Fly 833 SKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQI 897
Fly 898 ELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSR 962
Fly 963 SGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLD---ILKSKF---------FNDKFC 1015
Fly 1016 ADFLT----------QNATAILRPAQLQLMKDEE--QLAKVQRHEKHI-----RSWEKKKPAKLR 1063
Fly 1064 AAFTHFSEELREEVEVKRPNEINSK---TGRRRFDEGLLKLWKKADAEDKA----------LYRK 1115
Fly 1116 KYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGL 1180
Fly 1181 IAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG---QQHQ 1242
Fly 1243 AEKLR-----INLNSVTLANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHII 1302
Fly 1303 KYMHQTFFKQ---LIRAILKVSNASRTTKIVVIDDKKDADKEDDNDLDNGDEVGRSKAKANDDDS 1364
Fly 1365 ----SDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGD 1425
Fly 1426 DKAVERLLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAII 1490
Fly 1491 YK------------GTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVI 1543
Fly 1544 VKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSS-PLQQMSFESSLQFLKSAA 1607
Fly 1608 GFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI1 | NP_523743.1 | RNA_pol_rpoA1 | 14..1009 | CDD:274106 | 315/1023 (31%) |
RNAP_I_RPA1_N | 18..982 | CDD:259844 | 299/990 (30%) | ||
RNA_pol_Rpb1_5 | 936..1593 | CDD:282807 | 205/726 (28%) | ||
HMG-box | 1057..1119 | CDD:294061 | 13/74 (18%) | ||
RNAP_I_Rpa1_C | 1166..1638 | CDD:132722 | 138/499 (28%) | ||
RPO21 | NP_010141.1 | RNAP_II_RPB1_N | 15..853 | CDD:259848 | 299/993 (30%) |
RNA_pol_Rpb1_6 | 873..1056 | CDD:398590 | 37/209 (18%) | ||
RNAP_II_Rpb1_C | 1035..1446 | CDD:132720 | 142/519 (27%) | ||
RNA_pol_Rpb1_R | 1698..1709 | CDD:398599 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |