DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI1 and RPO21

DIOPT Version :9

Sequence 1:NP_523743.1 Gene:RpI1 / 36617 FlyBaseID:FBgn0019938 Length:1642 Species:Drosophila melanogaster
Sequence 2:NP_010141.1 Gene:RPO21 / 851415 SGDID:S000002299 Length:1733 Species:Saccharomyces cerevisiae


Alignment Length:1721 Identity:487/1721 - (28%)
Similarity:776/1721 - (45%) Gaps:389/1721 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DLEFAVFTDQEIRKLSVVKVITGITFD-ALGHAIPGGLYDIRMGSYGRCMDPCGTCLK-LQDCPG 77
            :::|.:|:.:|:|.:||.|:....|.| ....|..|||.|.|:||..|.: .|.||.: :.:|||
Yeast    16 EVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL-KCQTCQEGMNECPG 79

  Fly    78 HMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQELELF 142
            |.|||:|..||::..||..::::....|:||.||.:.:|.                      ||.
Yeast    80 HFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHN----------------------ELM 122

  Fly   143 KSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAITHSALQRLGKKC 207
            :..:..::::.            ..||::.|.:         ||..|...........|.:.:  
Yeast   123 RQALAIKDSKK------------RFAAIWTLCK---------TKMVCETDVPSEDDPTQLVSR-- 164

  Fly   208 RHCNKSMRFVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVIFADECRRYLRQIYANYPELLKL 272
            ..|..:...:|....:||     ...|:...||.....:.:|:..:|.....:.|          
Yeast   165 GGCGNTQPTIRKDGLKLV-----GSWKKDRATGDADEPELRVLSTEEILNIFKHI---------- 214

  Fly   273 LVPVLGLSNTDLTQGDRSPV----DLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENN 333
                   |..|.|....:.|    :...:..|||.||..||.....:..:|  :.|:...:.:  
Yeast   215 -------SVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRG--EDDLTFKLAD-- 268

  Fly   334 HVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETA-HEKLYTAWLALQMSVDVLLDVNMSRE----M 393
                 :||            |..:.:||:...| |..:..|...||..|...:|.:::.:    .
Yeast   269 -----ILK------------ANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQ 316

  Fly   394 KSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVT 455
            |||..:|.|   ::.|.|.||.::|||||:::|||||:.|||:.:|::|:|...||.|:||..||
Yeast   317 KSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVT 381

  Fly   456 EWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVL 520
            .:|:..|.::|.|||:.||||.|:...:|....:   ..|||....:|     :.|.| |.||::
Yeast   382 PYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDL---RYSKRAGDIQL-----QYGWK-VERHIM 437

  Fly   521 NGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEA 585
            :.|.:|.||||||||.|:|.|:.::: ...||||:.|....|||||||||||.|.||||..|||.
Yeast   438 DNDPVLFNRQPSLHKMSMMAHRVKVI-PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEL 501

  Fly   586 YNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF-----QGLSQLKKDI 645
            ..|..|....:.|:...|..|::||.:....||::|..|...:....:::     .|        
Yeast   502 SQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDG-------- 558

  Fly   646 KLLP-PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGT---N 706
             ::| |.|:||..|||||||||.    .||.|   |:|..|.:                ||   :
Yeast   559 -VIPTPAIIKPKPLWSGKQILSV----AIPNG---IHLQRFDE----------------GTTLLS 599

  Fly   707 PEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQL 771
            |:.|.:     .|.:|:::.||::|:..|::..||||.:....|..|...|.....||..|:|..
Yeast   600 PKDNGM-----LIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLH 659

  Fly   772 EGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEK----MEAAYVKD 832
            .||:.|:.|.:......|:..:.|.|.:.       ..|::..|...:.|..|    :..:: :|
Yeast   660 NGFSTGIGDTIADGPTMREITETIAEAKK-------KVLDVTKEAQANLLTAKHGMTLRESF-ED 716

  Fly   833 SKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQI 897
            :..|.|.:.:.|:   |...::|...|          ||::.||::|:|||.:|..|:|..:||.
Yeast   717 NVVRFLNEARDKA---GRLAEVNLKDL----------NNVKQMVMAGSKGSFINIAQMSACVGQQ 768

  Fly   898 ELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSR 962
            .:||||.......::||.|:..:.||:|.||::..::.|:.||:||||.|.||||||||||||:.
Yeast   769 SVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833

  Fly   963 SGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLD---ILKSKF---------FNDKFC 1015
            :||:||.|:|.||.:.||||.|.|:|..:|:||:|||||:|   |.|...         |..::.
Yeast   834 TGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYR 898

  Fly  1016 ADFLT----------QNATAILRPAQLQLMKDEE--QLAKVQRHEKHI-----RSWEKKKPAKLR 1063
            .|.|.          ::.:.||...:||::.|||  ||.|.::..:.:     .:|  ..|..:|
Yeast   899 VDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANW--PLPVNIR 961

  Fly  1064 AAFTHFSEELREEVEVKRPNEINSK---TGRRRFDEGLLKLWKKADAEDKA----------LYRK 1115
            ....:..:..  .::..:|:::..|   .|.:...|.||.|..|.:....|          |.|.
Yeast   962 RIIQNAQQTF--HIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRS 1024

  Fly  1116 KYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGL 1180
            :.|                      ||:::.:|...|.|....:::| ..:.::|:..|||.||:
Yeast  1025 RLA----------------------TRRVLQEYRLTKQAFDWVLSNI-EAQFLRSVVHPGEMVGV 1066

  Fly  1181 IAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG---QQHQ 1242
            :||||||||:||||||||||||.....||.|:|||:|||.:| .|:||||:.:.::||   .|.|
Yeast  1067 LAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMKTPSLTVYLEPGHAADQEQ 1130

  Fly  1243 AEKLR-----INLNSVTLANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHII 1302
            |:.:|     ..|.|||:|:.: |.......|:.||......:.|..|..|.             
Yeast  1131 AKLIRSAIEHTTLKSVTIASEI-YYDPDPRSTVIPEDEEIIQLHFSLLDEEA------------- 1181

  Fly  1303 KYMHQTFFKQ---LIRAILKVSNASRTTKIVVIDDKKDADKEDDNDLDNGDEVGRSKAKANDDDS 1364
               .|:|.:|   |:|  |::..|:.                :|.||..| :||....:...:|.
Yeast  1182 ---EQSFDQQSPWLLR--LELDRAAM----------------NDKDLTMG-QVGERIKQTFKNDL 1224

  Fly  1365 ----SDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGD 1425
                |:|||:.    :.::.|....|..|...:.||.|                           
Yeast  1225 FVIWSEDNDEK----LIIRCRVVRPKSLDAETEAEEDH--------------------------- 1258

  Fly  1426 DKAVERLLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAII 1490
               :.:.:.|.|::                |:::|                    .|::|:|.::
Yeast  1259 ---MLKKIENTMLE----------------NITLR--------------------GVENIERVVM 1284

  Fly  1491 YK------------GTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVI 1543
            .|            ..:.:.:|:|||:|:.|:.....| |..|:|:|....|....||||....:
Yeast  1285 MKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAAL 1348

  Fly  1544 VKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSS-PLQQMSFESSLQFLKSAA 1607
            .|||.||....|..|:.||::|:.|.||..|....::|.|...|:: .|.:.|||.:::.|..|.
Yeast  1349 YKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAG 1413

  Fly  1608 GFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638
            .....|:....|..:::|.....|||||:::
Yeast  1414 ASAELDDCRGVSENVILGQMAPIGTGAFDVM 1444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI1NP_523743.1 RNA_pol_rpoA1 14..1009 CDD:274106 315/1023 (31%)
RNAP_I_RPA1_N 18..982 CDD:259844 299/990 (30%)
RNA_pol_Rpb1_5 936..1593 CDD:282807 205/726 (28%)
HMG-box 1057..1119 CDD:294061 13/74 (18%)
RNAP_I_Rpa1_C 1166..1638 CDD:132722 138/499 (28%)
RPO21NP_010141.1 RNAP_II_RPB1_N 15..853 CDD:259848 299/993 (30%)
RNA_pol_Rpb1_6 873..1056 CDD:398590 37/209 (18%)
RNAP_II_Rpb1_C 1035..1446 CDD:132720 142/519 (27%)
RNA_pol_Rpb1_R 1698..1709 CDD:398599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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